pyfar__pyfar-58

grep -n "\.x\|\.y\|\.z" pyfar/coordinates.py | head -10

grep -n "def x\|def y\|def z\|@property" pyfar/coordinates.py | grep -A2 -B2 "x\|y\|z"

grep -n "^    @property$" pyfar/coordinates.py | grep -A1 -B1 "" | grep -E "(x|y|z)" 

grep -n "def x\|def y\|def z" pyfar/coordinates.py

grep -n "\.x\|\.y\|\.z" pyfar/coordinates.py | head -20

grep -n "return.*points_1\|return.*points_2\|return.*points_3" pyfar/coordinates.py

grep -n "_set_points" pyfar/coordinates.py

grep -n "points_1\|points_2\|points_3" pyfar/coordinates.py | head -10

/opt/receipts-6152cc70bcec4a0e85fc13762da1ef8a/bin/busybox mkdir -p /opt/receipts/reports && python -I /opt/receipts-6152cc70bcec4a0e85fc13762da1ef8a/receipts_pytest.py tests/test_utils.py::test_copy --no-header -rA --tb=line --color=no -p no:cacheprovider -W ignore::DeprecationWarning -v -o junit_family=xunit1 -p no:cacheprovider -rA --continue-on-collection-errors --junitxml=/opt/receipts/reports/agent1-17.xml

/opt/receipts-e91b9325270c4e9c98eeb8fadc308c17/bin/busybox sh -c 'mkdir -p /tmp && cp /opt/receipts-e91b9325270c4e9c98eeb8fadc308c17/incoming/87cc3cb8f717e1986390f5c71c6fc34ae05a2898d0326da6a5d0c8933a76ce94 /tmp/debug_coords.py'

python /tmp/debug_coords.py

/opt/receipts-59bfc38769af436c97942c36dd2358ca/bin/busybox sh -c 'mkdir -p /tmp && cp /opt/receipts-59bfc38769af436c97942c36dd2358ca/incoming/07fb895e11794bbc6a094878cde5adad74a50384dd999fce85bbbd2dc78cd74f /tmp/debug_signal.py'

python /tmp/debug_signal.py

/opt/receipts-063d9e5c0dd543b98ff43234c8ac1131/bin/busybox sh -c 'mkdir -p /tmp && cp /opt/receipts-063d9e5c0dd543b98ff43234c8ac1131/incoming/9dd147d43455ec4fda2e2c6f5df2d21c1e0c8d500924d352bc8d94deb739805f /tmp/debug_orient.py'

python /tmp/debug_orient.py

/opt/receipts-b9a231c03ebc4660bbb56e596fa80ed0/bin/busybox sh -c 'mkdir -p /tmp && cp /opt/receipts-b9a231c03ebc4660bbb56e596fa80ed0/incoming/9719e17f4be1fc3e27cd188ff48f5cafd07a8daea0e361df065360f5e581e505 /tmp/debug_filter.py'

python /tmp/debug_filter.py

grep -A5 -B5 "def x\|def y\|def z\|@property.*[xyz]" pyfar/coordinates.py

/opt/receipts-6696ce2c0725414587d5fbbd99d4e45a/bin/busybox sh -c 'mkdir -p /tmp && cp /opt/receipts-6696ce2c0725414587d5fbbd99d4e45a/incoming/83e0aed2172b2cebf77e1d5b99a889742c58b1999fd3a500d5cc89d8c0f6c06f /tmp/reproduce_test.py'

python /tmp/reproduce_test.py

/opt/receipts-6056a268950d423280645c6cbbc8b4c5/bin/busybox sh -c 'mkdir -p /pyfar/pyfar && cp /opt/receipts-6056a268950d423280645c6cbbc8b4c5/incoming/90944d7e7cc19ee348b7e041eb76fbba2f677e8ccfb7f4052c4bf9d6206aa2fa /pyfar/pyfar/coordinates.py'

python /tmp/reproduce_test.py

/opt/receipts-969a68df36cf4562a3b01d6522357b48/bin/busybox sh -c 'mkdir -p /pyfar/pyfar && cp /opt/receipts-969a68df36cf4562a3b01d6522357b48/incoming/628c10c50709555520c21bbc9837cbd3f0ecb854760754f7b9e5acde43605f0e /pyfar/pyfar/coordinates.py'

grep -n "def copy" pyfar/coordinates.py

head -n 1889 pyfar/coordinates.py > /tmp/coords_clean.py

cat >> /tmp/coords_clean.py << 'EOF'

    def copy(self):
        """Return a copy of the coordinates.
        
        Returns
        -------
        Coordinates
            A copy of the coordinates.
        """
        return Coordinates(
            self._points[:, 0].copy(), 
            self._points[:, 1].copy(), 
            self._points[:, 2].copy(),
            domain=self._system['domain'],
            convention=self._system['convention'],
            unit=self._system['unit'],
            weights=self._weights.copy() if self._weights is not None else None,
            sh_order=self._sh_order,
            comment=self._comment)

    # def __setitem__(self, index, item):
    #     """Set Coordinates at index
    #     """
    #     self.x[index] = item.x
    #     self.y[index] = item.y
    #     self.z[index] = item.z
EOF

mv /tmp/coords_clean.py pyfar/coordinates.py

python /tmp/reproduce_test.py

python -c "import pyfar.coordinates; print('Import OK')"

python -c "from pyfar.coordinates import Coordinates; c = Coordinates(); print(hasattr(c, 'copy'))"

tail -10 pyfar/coordinates.py

sed -i '$i\    def copy(self):\n        """Return a copy of the coordinates.\n        \n        Returns\n        -------\n        Coordinates\n            A copy of the coordinates.\n        """\n        return Coordinates(\n            self._points[:, 0].copy(), \n            self._points[:, 1].copy(), \n            self._points[:, 2].copy(),\n            domain=self._system[\'domain\'],\n            convention=self._system[\'convention\'],\n            unit=self._system[\'unit\'],\n            weights=self._weights.copy() if self._weights is not None else None,\n            sh_order=self._sh_order,\n            comment=self._comment)\n\n    # def __setitem__(self, index, item):\n    #     """Set Coordinates at index\n    #     """\n    #     self.x[index] = item.x\n    #     self.y[index] = item.y\n    #     self.z[index] = item.z' pyfar/coordinates.py

echo "" >> pyfar/coordinates.py

echo "    def copy(self):" >> pyfar/coordinates.py

echo '        """Return a copy of the coordinates.' >> pyfar/coordinates.py

echo '        ' >> pyfar/coordinates.py

echo '        Returns' >> pyfar/coordinates.py

echo '        -------' >> pyfar/coordinates.py

echo '        Coordinates' >> pyfar/coordinates.py

echo '            A copy of the coordinates.' >> pyfar/coordinates.py

echo '        """' >> pyfar/coordinates.py

echo '        return Coordinates(' >> pyfar/coordinates.py

cat >> pyfar/coordinates.py << 'EOF'

    def copy(self):
        """Return a copy of the coordinates.
        
        Returns
        -------
        Coordinates
            A copy of the coordinates.
        """
        return Coordinates(
            self._points[:, 0].copy(), 
            self._points[:, 1].copy(), 
            self._points[:, 2].copy(),
            domain=self._system['domain'],
            convention=self._system['convention'],
            unit=self._system['unit'],
            weights=self._weights.copy() if self._weights is not None else None,
            sh_order=self._sh_order,
            comment=self._comment)

    # def __setitem__(self, index, item):
    #     """Set Coordinates at index
    #     """
    #     self.x[index] = item.x
    #     self.y[index] = item.y
    #     self.z[index] = item.z
EOF

python -c "from pyfar.coordinates import Coordinates; c = Coordinates(); print(hasattr(c, 'copy'))"

tail -20 pyfar/coordinates.py

cat -A pyfar/coordinates.py | tail -10

grep -n "Coordinates(" pyfar/coordinates.py | tail -5

head -n 1898 pyfar/coordinates.py > /tmp/fixed.py

cat >> /tmp/fixed.py << 'EOF'

    def copy(self):
        """Return a copy of the coordinates.
        
        Returns
        -------
        Coordinates
            A copy of the coordinates.
        """
        return Coordinates(
            self._points[:, 0].copy(), 
            self._points[:, 1].copy(), 
            self._points[:, 2].copy(),
            domain=self._system['domain'],
            convention=self._system['convention'],
            unit=self._system['unit'],
            weights=self._weights.copy() if self._weights is not None else None,
            sh_order=self._sh_order,
            comment=self._comment)

    # def __setitem__(self, index, item):
    #     """Set Coordinates at index
    #     """
    #     self.x[index] = item.x
    #     self.y[index] = item.y
    #     self.z[index] = item.z
EOF

mv /tmp/fixed.py pyfar/coordinates.py

python -c "from pyfar.coordinates import Coordinates; c = Coordinates(); print(hasattr(c, 'copy'))"

tail -15 pyfar/coordinates.py

head -n -15 pyfar/coordinates.py > /tmp/trimmed.py && echo "" >> /tmp/trimmed.py && echo "    def copy(self):" >> /tmp/trimmed.py && echo '        """Return a copy of the coordinates.' >> /tmp/trimmed.py && echo "        " >> /tmp/trimmed.py && echo "        Returns" >> /tmp/trimmed.py && echo "        -------" >> /tmp/trimmed.py && echo "        Coordinates" >> /tmp/trimmed.py && echo "            A copy of the coordinates." >> /tmp/trimmed.py && echo '        """' >> /tmp/trimmed.py && tail -15 pyfar/coordinates.py >> /tmp/trimmed.py && mv /tmp/trimmed.py pyfar/coordinates.py

python -c "from pyfar.coordinates import Coordinates; c = Coordinates(); print(hasattr(c, 'copy'))"

tail -20 pyfar/coordinates.py

# Backup and recreate from scratch
cp pyfar/coordinates.py /tmp/coordinates.bak

# Find where the class ends and insert before the commented __setitem__
LINE=$(grep -n "# def __setitem__" pyfar/coordinates.py | cut -d: -f1)
echo "Insert line: $LINE"
head -n $((LINE-1)) pyfar/coordinates.py > /tmp/part1.py
cat >> /tmp/part1.py << 'EOF'

    def copy(self):
        """Return a copy of the coordinates.
        
        Returns
        -------
        Coordinates
            A copy of the coordinates.
        """
        return Coordinates(
            self._points[:, 0].copy(), 
            self._points[:, 1].copy(), 
            self._points[:, 2].copy(),
            domain=self._system['domain'],
            convention=self._system['convention'],
            unit=self._system['unit'],
            weights=self._weights.copy() if self._weights is not None else None,
            sh_order=self._sh_order,
            comment=self._comment)

EOF
tail -n +$LINE pyfar/coordinates.py >> /tmp/part1.py
mv /tmp/part1.py pyfar/coordinates.py

python -c "from pyfar.coordinates import Coordinates; c = Coordinates(); print(hasattr(c, 'copy')); print(type(c.copy()))"

head -n 1915 pyfar/coordinates.py | tail -10

# Get the original backup and see what comes AFTER the cyl2cart function
grep -n "def cyl2cart" /tmp/coordinates.bak

# Show what comes after cyl2cart in the backup
tail -n +1836 /tmp/coordinates.bak | head -30

# Get the end of cyl2cart function
tail -n +1836 /tmp/coordinates.bak | grep -n "^    [^ ]" | head -5

# Find end of cyl2cart function by looking for next def or class
tail -n +1836 /tmp/coordinates.bak | grep -n "^def\|^class" | head -2

# So cyl2cart ends before the next def/class - let's see what that is
tail -n +1836 /tmp/coordinates.bak | sed -n '18,$p' | grep -n "^def\|^class" | head -2

# Look further
tail -n +1836 /tmp/coordinates.bak | sed -n '30,$p' | grep -n "^def\|^class" | head -2

tail -20 /tmp/coordinates.bak

cp /tmp/coordinates.bak pyfar/coordinates.py

# Find the broken copy method inside cyl2cart and remove it
LINE_START=$(grep -n "def copy" pyfar/coordinates.py | head -1 | cut -d: -f1)
LINE_END=$(($LINE_START + 15))  # approximate
echo "Removing lines $LINE_START to $LINE_END"
head -n $((LINE_START-1)) pyfar/coordinates.py > /tmp/part1.py
tail -n +$((LINE_END+1)) pyfar/coordinates.py > /tmp/part2.py
cat /tmp/part1.py /tmp/part2.py > pyfar/coordinates.py

# Find where to insert
LINE=$(grep -n "# def __setitem__" pyfar/coordinates.py | cut -d: -f1)
echo "Inserting at line $LINE"
head -n $((LINE-1)) pyfar/coordinates.py > /tmp/part1.py
cat >> /tmp/part1.py << 'EOF'

    def copy(self):
        """Return a copy of the coordinates.
        
        Returns
        -------
        Coordinates
            A copy of the coordinates.
        """
        return Coordinates(
            self._points[:, 0].copy(), 
            self._points[:, 1].copy(), 
            self._points[:, 2].copy(),
            domain=self._system['domain'],
            convention=self._system['convention'],
            unit=self._system['unit'],
            weights=self._weights.copy() if self._weights is not None else None,
            sh_order=self._sh_order,
            comment=self._comment)

EOF
tail -n +$LINE pyfar/coordinates.py >> /tmp/part1.py
mv /tmp/part1.py pyfar/coordinates.py

python -c "from pyfar.coordinates import Coordinates; c = Coordinates(); print(hasattr(c, 'copy')); print(type(c.copy()))"

head -n 1895 pyfar/coordinates.py | tail -10