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{"receipt_id":"agent1-25","seq":25,"branch_id":"agent1","kind":"command","cmd":"python /tmp/debug_filter.py","path":null,"exit_code":0,"stdout_tail":"Filter Attributes: ['_FILTER_FUNCS', '__class__', '__delattr__', '__dict__', '__dir__', '__doc__', '__eq__', '__format__', '__ge__', '__getattribute__', '__gt__', '__hash__', '__init__', '__init_subclass__', '__le__', '__lt__', '__module__', '__ne__', '__new__', '__reduce__', '__reduce_ex__', '__repr__', '__setattr__', '__sizeof__', '__str__', '__subclasshook__', '__weakref__', '_coefficients', '_comment', '_filter_func', '_initialized', '_sampling_rate', '_state', 'comment', 'filter_func', 'initialize', 'process', 'reset', 'sampling_rate', 'shape', 'size', 'state']\n\nDict contents:\n  _coefficients: None (type: <class 'NoneType'>)\n  _initialized: False (type: <class 'bool'>)\n  _state: None (type: <class 'NoneType'>)\n  _filter_func: None (type: <class 'NoneType'>)\n  _FILTER_FUNCS: {'default': None, 'zerophase': None} (type: <class 'dict'>)\n  _sampling_rate: None (type: <class 'NoneType'>)\n  _comment: None (type: <class 'NoneType'>)\n","stderr_tail":"","stdout_sha256":"a9e47641e527a9a0e496b86a2520ef4fe4b32d640bf10c75334759e139c400c3","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-25.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:08:19.393883Z","duration_s":1.425754,"timed_out":false,"image_before":"6ba0a829-335f-4f4e-8486-2b31c7fe18b1","image_after":"1f3a8515-7a78-41c3-b25f-6ec4bf93b953","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
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{"receipt_id":"agent1-27","seq":27,"branch_id":"agent1","kind":"write","cmd":"/opt/receipts-6696ce2c0725414587d5fbbd99d4e45a/bin/busybox sh -c 'mkdir -p /tmp && cp /opt/receipts-6696ce2c0725414587d5fbbd99d4e45a/incoming/83e0aed2172b2cebf77e1d5b99a889742c58b1999fd3a500d5cc89d8c0f6c06f /tmp/reproduce_test.py'","path":"/tmp/reproduce_test.py","exit_code":0,"stdout_tail":"","stderr_tail":"","stdout_sha256":"83e0aed2172b2cebf77e1d5b99a889742c58b1999fd3a500d5cc89d8c0f6c06f","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-27.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:08:29.558784Z","duration_s":0.0053,"timed_out":false,"image_before":"8f37108d-1362-4a8f-81b7-f06c9a43df53","image_after":"70153ba8-0bd4-42b7-91e3-9bf5c0f59e4f","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-28","seq":28,"branch_id":"agent1","kind":"command","cmd":"python /tmp/reproduce_test.py","path":null,"exit_code":1,"stdout_tail":"Testing Signal\n  Original dict length: 10\n  Copy dict length: 10\n    Checking _sampling_rate\n    Checking _dtype\n    Checking _VALID_SIGNAL_TYPE\n    Checking _VALID_SIGNAL_DOMAIN\n    Checking _domain\n    Checking _data\n    Checking _n_samples\n    Checking _VALID_FFT_NORMS\n    Checking _fft_norm\n    Checking _comment\n  PASSED\nTesting Orientations\n  Original dict length: 0\n  Copy dict length: 0\n  PASSED\nTesting Coordinates\n","stderr_tail":"Traceback (most recent call last):\n  File \"/tmp/reproduce_test.py\", line 35, in <module>\n    test_copy_simple()\n  File \"/tmp/reproduce_test.py\", line 15, in test_copy_simple\n    obj_copy = obj.copy()\nAttributeError: 'Coordinates' object has no attribute 'copy'\n","stdout_sha256":"c7eec7a20e56e93cbfd714d21844482032f3dc3a2fcada45902039f7cd527105","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-28.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:08:32.984094Z","duration_s":1.50484,"timed_out":false,"image_before":"70153ba8-0bd4-42b7-91e3-9bf5c0f59e4f","image_after":"52d9f701-cb25-42b4-8b42-ea8c2c654278","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-29","seq":29,"branch_id":"agent1","kind":"write","cmd":"/opt/receipts-6056a268950d423280645c6cbbc8b4c5/bin/busybox sh -c 'mkdir -p /pyfar/pyfar && cp /opt/receipts-6056a268950d423280645c6cbbc8b4c5/incoming/90944d7e7cc19ee348b7e041eb76fbba2f677e8ccfb7f4052c4bf9d6206aa2fa /pyfar/pyfar/coordinates.py'","path":"pyfar/coordinates.py","exit_code":0,"stdout_tail":"","stderr_tail":"","stdout_sha256":"90944d7e7cc19ee348b7e041eb76fbba2f677e8ccfb7f4052c4bf9d6206aa2fa","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-29.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:08:42.250056Z","duration_s":0.004794,"timed_out":false,"image_before":"52d9f701-cb25-42b4-8b42-ea8c2c654278","image_after":"c53965c7-e7b6-4f57-830c-fbf8e86d5b1b","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-30","seq":30,"branch_id":"agent1","kind":"command","cmd":"python /tmp/reproduce_test.py","path":null,"exit_code":1,"stdout_tail":"Testing Signal\n  Original dict length: 10\n  Copy dict length: 10\n    Checking _sampling_rate\n    Checking _dtype\n    Checking _VALID_SIGNAL_TYPE\n    Checking _VALID_SIGNAL_DOMAIN\n    Checking _domain\n    Checking _data\n    Checking _n_samples\n    Checking _VALID_FFT_NORMS\n    Checking _fft_norm\n    Checking _comment\n  PASSED\nTesting Orientations\n  Original dict length: 0\n  Copy dict length: 0\n  PASSED\nTesting Coordinates\n","stderr_tail":"Traceback (most recent call last):\n  File \"/tmp/reproduce_test.py\", line 35, in <module>\n    test_copy_simple()\n  File \"/tmp/reproduce_test.py\", line 15, in test_copy_simple\n    obj_copy = obj.copy()\nAttributeError: 'Coordinates' object has no attribute 'copy'\n","stdout_sha256":"c7eec7a20e56e93cbfd714d21844482032f3dc3a2fcada45902039f7cd527105","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-30.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:08:46.738432Z","duration_s":1.424242,"timed_out":false,"image_before":"c53965c7-e7b6-4f57-830c-fbf8e86d5b1b","image_after":"1531c7c1-292f-4cef-8763-1a5c10a5f835","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-31","seq":31,"branch_id":"agent1","kind":"write","cmd":"/opt/receipts-969a68df36cf4562a3b01d6522357b48/bin/busybox sh -c 'mkdir -p /pyfar/pyfar && cp /opt/receipts-969a68df36cf4562a3b01d6522357b48/incoming/628c10c50709555520c21bbc9837cbd3f0ecb854760754f7b9e5acde43605f0e /pyfar/pyfar/coordinates.py'","path":"pyfar/coordinates.py","exit_code":0,"stdout_tail":"","stderr_tail":"","stdout_sha256":"628c10c50709555520c21bbc9837cbd3f0ecb854760754f7b9e5acde43605f0e","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-31.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:09:02.868051Z","duration_s":0.004505,"timed_out":false,"image_before":"1531c7c1-292f-4cef-8763-1a5c10a5f835","image_after":"13330578-1c63-4e2f-ac2b-3dd7f2de1e91","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-32","seq":32,"branch_id":"agent1","kind":"write","cmd":"/opt/receipts-25354985ac7946f587bfbadfd70fb6ab/bin/busybox sh -c 'mkdir -p /pyfar/pyfar && cp /opt/receipts-25354985ac7946f587bfbadfd70fb6ab/incoming/90944d7e7cc19ee348b7e041eb76fbba2f677e8ccfb7f4052c4bf9d6206aa2fa /pyfar/pyfar/coordinates.py'","path":"pyfar/coordinates.py","exit_code":0,"stdout_tail":"","stderr_tail":"","stdout_sha256":"90944d7e7cc19ee348b7e041eb76fbba2f677e8ccfb7f4052c4bf9d6206aa2fa","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-32.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:09:10.601904Z","duration_s":0.005129,"timed_out":false,"image_before":"13330578-1c63-4e2f-ac2b-3dd7f2de1e91","image_after":"2e1cc518-9503-47a3-a064-9d8a82c775b3","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-33","seq":33,"branch_id":"agent1","kind":"command","cmd":"python /tmp/reproduce_test.py","path":null,"exit_code":1,"stdout_tail":"Testing Signal\n  Original dict length: 10\n  Copy dict length: 10\n    Checking _sampling_rate\n    Checking _dtype\n    Checking _VALID_SIGNAL_TYPE\n    Checking _VALID_SIGNAL_DOMAIN\n    Checking _domain\n    Checking _data\n    Checking _n_samples\n    Checking _VALID_FFT_NORMS\n    Checking _fft_norm\n    Checking _comment\n  PASSED\nTesting Orientations\n  Original dict length: 0\n  Copy dict length: 0\n  PASSED\nTesting Coordinates\n","stderr_tail":"Traceback (most recent call last):\n  File \"/tmp/reproduce_test.py\", line 35, in <module>\n    test_copy_simple()\n  File \"/tmp/reproduce_test.py\", line 15, in test_copy_simple\n    obj_copy = obj.copy()\nAttributeError: 'Coordinates' object has no attribute 'copy'\n","stdout_sha256":"c7eec7a20e56e93cbfd714d21844482032f3dc3a2fcada45902039f7cd527105","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-33.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:09:14.076711Z","duration_s":1.458715,"timed_out":false,"image_before":"2e1cc518-9503-47a3-a064-9d8a82c775b3","image_after":"7fbe0bfe-2fa0-4e8d-bd56-3077120bf258","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-34","seq":34,"branch_id":"agent1","kind":"command","cmd":"grep -n \"def copy\" pyfar/coordinates.py","path":null,"exit_code":0,"stdout_tail":"1890:    def copy(self):\n","stderr_tail":"","stdout_sha256":"aa9d4094021def557bd04f21f0dd5b3653ecdb2639838f762c7f3402cbd04ace","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-34.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:09:23.245259Z","duration_s":0.002682,"timed_out":false,"image_before":"7fbe0bfe-2fa0-4e8d-bd56-3077120bf258","image_after":"e0207930-8c61-404f-9732-0ac61741c160","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-35","seq":35,"branch_id":"agent1","kind":"diff","cmd":"compute patch in executor staging agent1-445005d54a614601b2d5db80d2d1ef74: /opt/homebrew/Cellar/git/2.53.0/bin/git -c core.hooksPath=/dev/null -c core.attributesFile=/dev/null -c diff.external= -c core.quotePath=false add -A && /opt/homebrew/Cellar/git/2.53.0/bin/git -c core.hooksPath=/dev/null -c core.attributesFile=/dev/null -c diff.external= -c core.quotePath=false diff --cached --binary --no-ext-diff --no-textconv --no-renames 0b7c5afd15bf3ee8a74626d38fda75ac371d562f","path":null,"exit_code":0,"stdout_tail":"diff --git a/pyfar/coordinates.py b/pyfar/coordinates.py\nindex bff6420..7d14258 100644\n--- a/pyfar/coordinates.py\n+++ b/pyfar/coordinates.py\n@@ -1887,6 +1887,25 @@ def cyl2cart(azimuth, height, radius):\n \n     return x, y, z\n \n+    def copy(self):\n+        \"\"\"Return a copy of the coordinates.\n+        \n+        Returns\n+        -------\n+        Coordinates\n+            A copy of the coordinates.\n+        \"\"\"\n+        return Coordinates(\n+            self._points[:, 0].copy(), \n+            self._points[:, 1].copy(), \n+            self._points[:, 2].copy(),\n+            domain=self._system['domain'],\n+            convention=self._system['convention'],\n+            unit=self._system['unit'],\n+            weights=self._weights.copy() if self._weights is not None else None,\n+            sh_order=self._sh_order,\n+            comment=self._comment)\n+\n     # def __setitem__(self, index, item):\n     #     \"\"\"Set Coordinates at index\n     #     \"\"\"\ndiff --git a/pyfar/orientations.py b/pyfar/orientations.py\nindex 0baa856..a68cc1b 100644\n--- a/pyfar/orientations.py\n+++ b/pyfar/orientations.py\n@@ -205,3 +205,13 @@ class Orientations(Rotation):\n             raise ValueError(f\"Expected assigned value to have shape\"\n                              f\" or (1, 4), got {quat.shape}\")\n         self._quat[idx] = quat\n+\n+    def copy(self):\n+        \"\"\"Return a copy of the orientations.\n+        \n+        Returns\n+        -------\n+        Orientations\n+            A copy of the orientations.\n+        \"\"\"\n+        return Orientations(self.as_quat())\ndiff --git a/pyfar/signal.py b/pyfar/signal.py\nindex daee267..95b915b 100644\n--- a/pyfar/signal.py\n+++ b/pyfar/signal.py\n@@ -394,6 +394,26 @@ class Signal(Audio):\n         \"\"\"\n         return SignalIterator(self._data.__iter__(), self)\n \n+    def copy(self):\n+        \"\"\"Return a copy of the signal.\n+        \n+        Returns a shallow copy of the Signal object with deep copies of \n+        the underlying data arrays.\n+        \n+        Returns\n+        -------\n+        Signal\n+            A copy of the signal.\n+        \"\"\"\n+        return Signal(\n+            self._data.copy(),\n+            sampling_rate=self._sampling_rate,\n+            n_samples=self._n_samples,\n+            domain=self._domain,\n+            fft_norm=self._fft_norm,\n+            dtype=self._dtype,\n+            comment=self._comment)\n+\n \n class SignalIterator(object):\n     \"\"\"Iterator for signals\n","stderr_tail":"","stdout_sha256":"2f26804b7c8762bf8c1c66dc4f3d1e265787da34b2be1b5f6f38883e900bd874","log_path":null,"tree_digest":"829d59dd63ea7842c780e52bf66c11dd80b193d3280054fce072313c97f61ab3","tree_download_s":2.389912084210664,"started_at":"2026-10-03T20:09:33.329103Z","duration_s":0.058827165979892015,"timed_out":false,"image_before":"e0207930-8c61-404f-9732-0ac61741c160","image_after":"e0207930-8c61-404f-9732-0ac61741c160","junit":null,"diff":{"files":[{"path":"pyfar/coordinates.py","added":19,"deleted":0,"category":"source","status":"modified"},{"path":"pyfar/orientations.py","added":10,"deleted":0,"category":"source","status":"modified"},{"path":"pyfar/signal.py","added":20,"deleted":0,"category":"source","status":"modified"}],"patch_sha256":"2f26804b7c8762bf8c1c66dc4f3d1e265787da34b2be1b5f6f38883e900bd874","patch_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/artifacts/agent1/agent1-35.patch"},"patch_sha256":"2f26804b7c8762bf8c1c66dc4f3d1e265787da34b2be1b5f6f38883e900bd874","dropped_paths":[],"snapshot_sha":"0b7c5afd15bf3ee8a74626d38fda75ac371d562f"}
{"receipt_id":"agent1-36","seq":36,"branch_id":"agent1","kind":"write","cmd":"/opt/receipts-b85c03fb22fb444aae3d7ac40985dd11/bin/busybox sh -c 'mkdir -p /pyfar/pyfar && cp /opt/receipts-b85c03fb22fb444aae3d7ac40985dd11/incoming/c37d4cff12440fb12cff6309319fbecccf22b95d2898ac90beab085c1c7191bd /pyfar/pyfar/coordinates.py'","path":"pyfar/coordinates.py","exit_code":0,"stdout_tail":"","stderr_tail":"","stdout_sha256":"c37d4cff12440fb12cff6309319fbecccf22b95d2898ac90beab085c1c7191bd","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-36.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:09:57.468223Z","duration_s":0.004416,"timed_out":false,"image_before":"e0207930-8c61-404f-9732-0ac61741c160","image_after":"39ce911a-7e88-48e3-9829-a3d07206eaa5","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-37","seq":37,"branch_id":"agent1","kind":"command","cmd":"tail -20 pyfar/coordinates.py","path":null,"exit_code":0,"stdout_tail":"        Coordinates\n            A copy of the coordinates.\n        \"\"\"\n        return Coordinates(\n            self._points[:, 0].copy(), \n            self._points[:, 1].copy(), \n            self._points[:, 2].copy(),\n            domain=self._system['domain'],\n            convention=self._system['convention'],\n            unit=self._system['unit'],\n            weights=self._weights.copy() if self._weights is not None else None,\n            sh_order=self._sh_order,\n            comment=self._comment)\n\n    # def __setitem__(self, index, item):\n    #     \"\"\"Set Coordinates at index\n    #     \"\"\"\n    #     self.x[index] = item.x\n    #     self.y[index] = item.y\n    #     self.z[index] = item.z\n","stderr_tail":"","stdout_sha256":"008c9890ef863b02e9a5f81ae27bd8a1120d67b1a485569df5224ab30eb43a06","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-37.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:10:00.364853Z","duration_s":0.00261,"timed_out":false,"image_before":"39ce911a-7e88-48e3-9829-a3d07206eaa5","image_after":"40a250cf-42fa-48be-a7a8-d54ddf54b277","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-38","seq":38,"branch_id":"agent1","kind":"write","cmd":"/opt/receipts-bf147e10778a4477a0d7f43e732b418e/bin/busybox sh -c 'mkdir -p /pyfar/pyfar && cp /opt/receipts-bf147e10778a4477a0d7f43e732b418e/incoming/d50247c52890e58a8df4dfdd9537cadc003d7520b7fbc7e0033feaf4c30b75b6 /pyfar/pyfar/coordinates.py'","path":"pyfar/coordinates.py","exit_code":0,"stdout_tail":"","stderr_tail":"","stdout_sha256":"d50247c52890e58a8df4dfdd9537cadc003d7520b7fbc7e0033feaf4c30b75b6","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-38.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:10:05.971679Z","duration_s":0.00447,"timed_out":false,"image_before":"40a250cf-42fa-48be-a7a8-d54ddf54b277","image_after":"3d5a9574-80e4-4696-95c2-56573798948c","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-39","seq":39,"branch_id":"agent1","kind":"command","cmd":"python /tmp/reproduce_test.py","path":null,"exit_code":1,"stdout_tail":"","stderr_tail":"Traceback (most recent call last):\n  File \"/tmp/reproduce_test.py\", line 1, in <module>\n    import pyfar\n  File \"/pyfar/pyfar/__init__.py\", line 11, in <module>\n    from .coordinates import Coordinates\n  File \"/pyfar/pyfar/coordinates.py\", line 1890\n    def copy(self):\n                   ^\nIndentationError: unindent does not match any outer indentation level\n","stdout_sha256":"45bf361a585738ba963f7c26f8bfaea20965c22425e61810cbdb2b23c1c673de","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-39.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:10:08.916594Z","duration_s":0.89222,"timed_out":false,"image_before":"3d5a9574-80e4-4696-95c2-56573798948c","image_after":"3503afab-ff2a-4f6f-8bf4-c85ba77fa2ca","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
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{"receipt_id":"agent1-41","seq":41,"branch_id":"agent1","kind":"command","cmd":"python /tmp/reproduce_test.py","path":null,"exit_code":1,"stdout_tail":"","stderr_tail":"Traceback (most recent call last):\n  File \"/tmp/reproduce_test.py\", line 1, in <module>\n    import pyfar\n  File \"/pyfar/pyfar/__init__.py\", line 11, in <module>\n    from .coordinates import Coordinates\n  File \"/pyfar/pyfar/coordinates.py\", line 1890\n    def copy(self):\n                   ^\nIndentationError: unindent does not match any outer indentation level\n","stdout_sha256":"45bf361a585738ba963f7c26f8bfaea20965c22425e61810cbdb2b23c1c673de","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-41.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:10:18.801757Z","duration_s":0.907039,"timed_out":false,"image_before":"9e57dceb-5d7d-41cb-9357-f0391f75a2f8","image_after":"56cfba76-df7b-4027-b392-e0e0db167ef1","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
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{"receipt_id":"agent1-43","seq":43,"branch_id":"agent1","kind":"command","cmd":"head -n -10 pyfar/coordinates.py > /tmp/coords_head.py && tail -n +1890 pyfar/coordinates.py | head -20","path":null,"exit_code":0,"stdout_tail":"  def copy(self):\n        \"\"\"Return a copy of the coordinates.\n        \n        Returns\n        -------\n\n    def copy(self):\n        \"\"\"Return a copy of the coordinates.\n        \n        Returns\n        -------\n        Coordinates\n            A copy of the coordinates.\n        \"\"\"\n        return Coordinates(\n            self._points[:, 0].copy(), \n            self._points[:, 1].copy(), \n            self._points[:, 2].copy(),\n            domain=self._system['domain'],\n            convention=self._system['convention'],\n","stderr_tail":"","stdout_sha256":"e239159b04c1da811cc1e3da504f92935497b5bec02234329eeaa8be3ba6d754","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-43.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:10:25.523220Z","duration_s":0.005561,"timed_out":false,"image_before":"0b955170-60da-4e77-9333-5543d24f2418","image_after":"39cc2047-7b50-4ae3-9d2a-424ff534e262","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
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{"receipt_id":"agent1-46","seq":46,"branch_id":"agent1","kind":"command","cmd":"cat >> /tmp/coords_clean.py << 'EOF'\n\n    def copy(self):\n        \"\"\"Return a copy of the coordinates.\n        \n        Returns\n        -------\n        Coordinates\n            A copy of the coordinates.\n        \"\"\"\n        return Coordinates(\n            self._points[:, 0].copy(), \n            self._points[:, 1].copy(), \n            self._points[:, 2].copy(),\n            domain=self._system['domain'],\n            convention=self._system['convention'],\n            unit=self._system['unit'],\n            weights=self._weights.copy() if self._weights is not None else None,\n            sh_order=self._sh_order,\n            comment=self._comment)\n\n    # def __setitem__(self, index, item):\n    #     \"\"\"Set Coordinates at index\n    #     \"\"\"\n    #     self.x[index] = item.x\n    #     self.y[index] = item.y\n    #     self.z[index] = item.z\nEOF","path":null,"exit_code":0,"stdout_tail":"","stderr_tail":"","stdout_sha256":"e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-46.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:10:36.111198Z","duration_s":0.001907,"timed_out":false,"image_before":"20fb7147-5e63-4eba-8565-44c8323f9787","image_after":"b7363931-d780-44b2-89c9-5e604d2d18c1","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
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{"receipt_id":"agent1-48","seq":48,"branch_id":"agent1","kind":"command","cmd":"python /tmp/reproduce_test.py","path":null,"exit_code":1,"stdout_tail":"Testing Signal\n  Original dict length: 10\n  Copy dict length: 10\n    Checking _sampling_rate\n    Checking _dtype\n    Checking _VALID_SIGNAL_TYPE\n    Checking _VALID_SIGNAL_DOMAIN\n    Checking _domain\n    Checking _data\n    Checking _n_samples\n    Checking _VALID_FFT_NORMS\n    Checking _fft_norm\n    Checking _comment\n  PASSED\nTesting Orientations\n  Original dict length: 0\n  Copy dict length: 0\n  PASSED\nTesting Coordinates\n","stderr_tail":"Traceback (most recent call last):\n  File \"/tmp/reproduce_test.py\", line 35, in <module>\n    test_copy_simple()\n  File \"/tmp/reproduce_test.py\", line 15, in test_copy_simple\n    obj_copy = obj.copy()\nAttributeError: 'Coordinates' object has no attribute 'copy'\n","stdout_sha256":"c7eec7a20e56e93cbfd714d21844482032f3dc3a2fcada45902039f7cd527105","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-48.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:10:41.900212Z","duration_s":1.47241,"timed_out":false,"image_before":"6dc91072-e4a0-465d-bdae-88210004b1dc","image_after":"2390e800-50be-41ad-8ff1-46720af5cfc2","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
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{"receipt_id":"agent1-50","seq":50,"branch_id":"agent1","kind":"command","cmd":"python -c \"from pyfar.coordinates import Coordinates; c = Coordinates(); print(hasattr(c, 'copy'))\"","path":null,"exit_code":0,"stdout_tail":"False\n","stderr_tail":"","stdout_sha256":"7fc755fadc1b31a6696b8ed57c69d2bfc37f5457735c8fcfae31fcbd7bba97d5","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-50.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:10:54.824470Z","duration_s":1.474447,"timed_out":false,"image_before":"777333ea-55b8-4d17-8a1e-dab20c8255c0","image_after":"41223827-3869-459b-ae7d-2de851edcf3c","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-51","seq":51,"branch_id":"agent1","kind":"command","cmd":"tail -10 pyfar/coordinates.py","path":null,"exit_code":0,"stdout_tail":"            weights=self._weights.copy() if self._weights is not None else None,\n            sh_order=self._sh_order,\n            comment=self._comment)\n\n    # def __setitem__(self, index, item):\n    #     \"\"\"Set Coordinates at index\n    #     \"\"\"\n    #     self.x[index] = item.x\n    #     self.y[index] = item.y\n    #     self.z[index] = item.z\n","stderr_tail":"","stdout_sha256":"c12dd18d0fba0e00b9d2d6eb0eeb59bd38ad154b06c7898c7e91d4616148a14c","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-51.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:10:59.245726Z","duration_s":0.002722,"timed_out":false,"image_before":"41223827-3869-459b-ae7d-2de851edcf3c","image_after":"336dfda9-3481-4a41-9f10-7b21d1144b1e","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-52","seq":52,"branch_id":"agent1","kind":"command","cmd":"sed -i '$i\\    def copy(self):\\n        \"\"\"Return a copy of the coordinates.\\n        \\n        Returns\\n        -------\\n        Coordinates\\n            A copy of the coordinates.\\n        \"\"\"\\n        return Coordinates(\\n            self._points[:, 0].copy(), \\n            self._points[:, 1].copy(), \\n            self._points[:, 2].copy(),\\n            domain=self._system[\\'domain\\'],\\n            convention=self._system[\\'convention\\'],\\n            unit=self._system[\\'unit\\'],\\n            weights=self._weights.copy() if self._weights is not None else None,\\n            sh_order=self._sh_order,\\n            comment=self._comment)\\n\\n    # def __setitem__(self, index, item):\\n    #     \"\"\"Set Coordinates at index\\n    #     \"\"\"\\n    #     self.x[index] = item.x\\n    #     self.y[index] = item.y\\n    #     self.z[index] = item.z' pyfar/coordinates.py","path":null,"exit_code":2,"stdout_tail":"","stderr_tail":"/bin/sh: 1: Syntax error: \"(\" unexpected\n","stdout_sha256":"6ec9cfe4651999545fa721490b4256eda2a695447439032d1de1854bc0cf7a89","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-52.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:11:03.052073Z","duration_s":0.001221,"timed_out":false,"image_before":"336dfda9-3481-4a41-9f10-7b21d1144b1e","image_after":"f9133e53-e644-4407-872b-f7c57ad0c0a5","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
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{"receipt_id":"agent1-60","seq":60,"branch_id":"agent1","kind":"command","cmd":"echo '            A copy of the coordinates.' >> pyfar/coordinates.py","path":null,"exit_code":0,"stdout_tail":"","stderr_tail":"","stdout_sha256":"e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-60.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:11:27.801603Z","duration_s":0.001283,"timed_out":false,"image_before":"46cc9fa8-1971-4b4a-a1f4-12a23f1b49d8","image_after":"904417c4-c78b-4a96-b69b-6b4fd66afc15","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-61","seq":61,"branch_id":"agent1","kind":"command","cmd":"echo '        \"\"\"' >> pyfar/coordinates.py","path":null,"exit_code":0,"stdout_tail":"","stderr_tail":"","stdout_sha256":"e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-61.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:11:30.717207Z","duration_s":0.001292,"timed_out":false,"image_before":"904417c4-c78b-4a96-b69b-6b4fd66afc15","image_after":"79944f2b-1307-46e7-89f6-7dba7a5c9df2","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-62","seq":62,"branch_id":"agent1","kind":"command","cmd":"echo '        return Coordinates(' >> pyfar/coordinates.py","path":null,"exit_code":0,"stdout_tail":"","stderr_tail":"","stdout_sha256":"e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-62.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:11:33.574007Z","duration_s":0.001351,"timed_out":false,"image_before":"79944f2b-1307-46e7-89f6-7dba7a5c9df2","image_after":"803b8f6d-27f6-494d-9ea8-57e5ed95c4f4","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-63","seq":63,"branch_id":"agent1","kind":"command","cmd":"cat >> pyfar/coordinates.py << 'EOF'\n\n    def copy(self):\n        \"\"\"Return a copy of the coordinates.\n        \n        Returns\n        -------\n        Coordinates\n            A copy of the coordinates.\n        \"\"\"\n        return Coordinates(\n            self._points[:, 0].copy(), \n            self._points[:, 1].copy(), \n            self._points[:, 2].copy(),\n            domain=self._system['domain'],\n            convention=self._system['convention'],\n            unit=self._system['unit'],\n            weights=self._weights.copy() if self._weights is not None else None,\n            sh_order=self._sh_order,\n            comment=self._comment)\n\n    # def __setitem__(self, index, item):\n    #     \"\"\"Set Coordinates at index\n    #     \"\"\"\n    #     self.x[index] = item.x\n    #     self.y[index] = item.y\n    #     self.z[index] = item.z\nEOF","path":null,"exit_code":0,"stdout_tail":"","stderr_tail":"","stdout_sha256":"e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-63.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:11:37.341372Z","duration_s":0.002848,"timed_out":false,"image_before":"803b8f6d-27f6-494d-9ea8-57e5ed95c4f4","image_after":"5eddf604-1365-4f93-9a0d-c72442138020","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-64","seq":64,"branch_id":"agent1","kind":"command","cmd":"python -c \"from pyfar.coordinates import Coordinates; c = Coordinates(); print(hasattr(c, 'copy'))\"","path":null,"exit_code":1,"stdout_tail":"","stderr_tail":"Traceback (most recent call last):\n  File \"<string>\", line 1, in <module>\n  File \"/pyfar/pyfar/__init__.py\", line 11, in <module>\n    from .coordinates import Coordinates\n  File \"/pyfar/pyfar/coordinates.py\", line 1925\n    return Coordinates(\n                      ^\nSyntaxError: '(' was never closed\n","stdout_sha256":"04d6c2b2654bd44943cf1b1f04c025f7669a2bd4a906f3e82286997b823eb44c","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-64.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:11:40.497409Z","duration_s":0.895135,"timed_out":false,"image_before":"5eddf604-1365-4f93-9a0d-c72442138020","image_after":"2769ba96-2c9f-4166-812c-4402ff851cfb","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-65","seq":65,"branch_id":"agent1","kind":"command","cmd":"tail -20 pyfar/coordinates.py","path":null,"exit_code":0,"stdout_tail":"        Coordinates\n            A copy of the coordinates.\n        \"\"\"\n        return Coordinates(\n            self._points[:, 0].copy(), \n            self._points[:, 1].copy(), \n            self._points[:, 2].copy(),\n            domain=self._system['domain'],\n            convention=self._system['convention'],\n            unit=self._system['unit'],\n            weights=self._weights.copy() if self._weights is not None else None,\n            sh_order=self._sh_order,\n            comment=self._comment)\n\n    # def __setitem__(self, index, item):\n    #     \"\"\"Set Coordinates at index\n    #     \"\"\"\n    #     self.x[index] = item.x\n    #     self.y[index] = item.y\n    #     self.z[index] = item.z\n","stderr_tail":"","stdout_sha256":"008c9890ef863b02e9a5f81ae27bd8a1120d67b1a485569df5224ab30eb43a06","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-65.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:11:45.201155Z","duration_s":0.002614,"timed_out":false,"image_before":"2769ba96-2c9f-4166-812c-4402ff851cfb","image_after":"5a196180-aaa8-4e0c-b808-f6b3c41f8e45","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-66","seq":66,"branch_id":"agent1","kind":"command","cmd":"cat -A pyfar/coordinates.py | tail -10","path":null,"exit_code":0,"stdout_tail":"            weights=self._weights.copy() if self._weights is not None else None,$\n            sh_order=self._sh_order,$\n            comment=self._comment)$\n$\n    # def __setitem__(self, index, item):$\n    #     \"\"\"Set Coordinates at index$\n    #     \"\"\"$\n    #     self.x[index] = item.x$\n    #     self.y[index] = item.y$\n    #     self.z[index] = item.z$\n","stderr_tail":"","stdout_sha256":"d62540ba3d665bb867ed081ba2cd1ae58838252c1000130047f06d49bd49c628","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-66.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:11:48.270037Z","duration_s":0.003979,"timed_out":false,"image_before":"5a196180-aaa8-4e0c-b808-f6b3c41f8e45","image_after":"15a62d78-042f-4526-887c-a9d5340108e6","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-67","seq":67,"branch_id":"agent1","kind":"command","cmd":"grep -n \"Coordinates(\" pyfar/coordinates.py | tail -5","path":null,"exit_code":0,"stdout_tail":"566:        >>> c = Coordinates()\n1571:        coords = Coordinates(points_1, points_2, points_3,\n1899:        return Coordinates(\n1925:        return Coordinates(\n1935:        return Coordinates(\n","stderr_tail":"","stdout_sha256":"ee61424b0abcd81f026bc796ebb69235722861fa1635d9c6703c7105c309f1ed","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-67.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:11:51.382993Z","duration_s":0.00415,"timed_out":false,"image_before":"15a62d78-042f-4526-887c-a9d5340108e6","image_after":"ee535fc9-c53d-485d-a341-179b15ce84a2","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-68","seq":68,"branch_id":"agent1","kind":"command","cmd":"head -n 1898 pyfar/coordinates.py > /tmp/fixed.py","path":null,"exit_code":0,"stdout_tail":"","stderr_tail":"","stdout_sha256":"e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-68.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:11:54.443434Z","duration_s":0.002756,"timed_out":false,"image_before":"ee535fc9-c53d-485d-a341-179b15ce84a2","image_after":"faaec31f-4641-4244-b171-396792cdee9f","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-69","seq":69,"branch_id":"agent1","kind":"command","cmd":"cat >> /tmp/fixed.py << 'EOF'\n\n    def copy(self):\n        \"\"\"Return a copy of the coordinates.\n        \n        Returns\n        -------\n        Coordinates\n            A copy of the coordinates.\n        \"\"\"\n        return Coordinates(\n            self._points[:, 0].copy(), \n            self._points[:, 1].copy(), \n            self._points[:, 2].copy(),\n            domain=self._system['domain'],\n            convention=self._system['convention'],\n            unit=self._system['unit'],\n            weights=self._weights.copy() if self._weights is not None else None,\n            sh_order=self._sh_order,\n            comment=self._comment)\n\n    # def __setitem__(self, index, item):\n    #     \"\"\"Set Coordinates at index\n    #     \"\"\"\n    #     self.x[index] = item.x\n    #     self.y[index] = item.y\n    #     self.z[index] = item.z\nEOF","path":null,"exit_code":0,"stdout_tail":"","stderr_tail":"","stdout_sha256":"e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-69.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:11:58.259745Z","duration_s":0.00295,"timed_out":false,"image_before":"faaec31f-4641-4244-b171-396792cdee9f","image_after":"fde75ac4-b37f-472b-aaa5-b8c05a9f1b21","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-70","seq":70,"branch_id":"agent1","kind":"command","cmd":"mv /tmp/fixed.py pyfar/coordinates.py","path":null,"exit_code":0,"stdout_tail":"","stderr_tail":"","stdout_sha256":"e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-70.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:12:01.209893Z","duration_s":0.003189,"timed_out":false,"image_before":"fde75ac4-b37f-472b-aaa5-b8c05a9f1b21","image_after":"9ea30eab-398b-4836-97e5-226c94468833","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-71","seq":71,"branch_id":"agent1","kind":"command","cmd":"python -c \"from pyfar.coordinates import Coordinates; c = Coordinates(); print(hasattr(c, 'copy'))\"","path":null,"exit_code":0,"stdout_tail":"False\n","stderr_tail":"","stdout_sha256":"7fc755fadc1b31a6696b8ed57c69d2bfc37f5457735c8fcfae31fcbd7bba97d5","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-71.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:12:04.654992Z","duration_s":1.467627,"timed_out":false,"image_before":"9ea30eab-398b-4836-97e5-226c94468833","image_after":"c84cc8af-04a4-457a-9ade-61aea36a5745","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-72","seq":72,"branch_id":"agent1","kind":"command","cmd":"tail -15 pyfar/coordinates.py","path":null,"exit_code":0,"stdout_tail":"            self._points[:, 1].copy(), \n            self._points[:, 2].copy(),\n            domain=self._system['domain'],\n            convention=self._system['convention'],\n            unit=self._system['unit'],\n            weights=self._weights.copy() if self._weights is not None else None,\n            sh_order=self._sh_order,\n            comment=self._comment)\n\n    # def __setitem__(self, index, item):\n    #     \"\"\"Set Coordinates at index\n    #     \"\"\"\n    #     self.x[index] = item.x\n    #     self.y[index] = item.y\n    #     self.z[index] = item.z\n","stderr_tail":"","stdout_sha256":"358bc241e6650b70d5b48840f9bb3dcf363667a03a8ff3fc5b5fab1a2909ba87","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-72.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:12:09.378722Z","duration_s":0.002564,"timed_out":false,"image_before":"c84cc8af-04a4-457a-9ade-61aea36a5745","image_after":"a2d13220-0c31-45fb-9dbb-e0e0b5854700","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-73","seq":73,"branch_id":"agent1","kind":"command","cmd":"head -n -15 pyfar/coordinates.py > /tmp/trimmed.py && echo \"\" >> /tmp/trimmed.py && echo \"    def copy(self):\" >> /tmp/trimmed.py && echo '        \"\"\"Return a copy of the coordinates.' >> /tmp/trimmed.py && echo \"        \" >> /tmp/trimmed.py && echo \"        Returns\" >> /tmp/trimmed.py && echo \"        -------\" >> /tmp/trimmed.py && echo \"        Coordinates\" >> /tmp/trimmed.py && echo \"            A copy of the coordinates.\" >> /tmp/trimmed.py && echo '        \"\"\"' >> /tmp/trimmed.py && tail -15 pyfar/coordinates.py >> /tmp/trimmed.py && mv /tmp/trimmed.py pyfar/coordinates.py","path":null,"exit_code":0,"stdout_tail":"","stderr_tail":"","stdout_sha256":"e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-73.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:12:13.123547Z","duration_s":0.006066,"timed_out":false,"image_before":"a2d13220-0c31-45fb-9dbb-e0e0b5854700","image_after":"6dbb8dcf-f54a-479e-8689-2ba9ebdc84f5","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-74","seq":74,"branch_id":"agent1","kind":"command","cmd":"python -c \"from pyfar.coordinates import Coordinates; c = Coordinates(); print(hasattr(c, 'copy'))\"","path":null,"exit_code":1,"stdout_tail":"","stderr_tail":"Traceback (most recent call last):\n  File \"<string>\", line 1, in <module>\n  File \"/pyfar/pyfar/__init__.py\", line 11, in <module>\n    from .coordinates import Coordinates\n  File \"/pyfar/pyfar/coordinates.py\", line 1911\n    def copy(self):\n    ^^^\nSyntaxError: invalid syntax\n","stdout_sha256":"f7ca5b37b0c389e86538b0054e20dabfaf0bef3caeb4ff6df43347f376df55ad","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-74.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:12:16.357849Z","duration_s":0.893224,"timed_out":false,"image_before":"6dbb8dcf-f54a-479e-8689-2ba9ebdc84f5","image_after":"27b16995-319e-481a-be27-2707f9dce70b","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-75","seq":75,"branch_id":"agent1","kind":"command","cmd":"tail -20 pyfar/coordinates.py","path":null,"exit_code":0,"stdout_tail":"        Returns\n        -------\n        Coordinates\n            A copy of the coordinates.\n        \"\"\"\n            self._points[:, 1].copy(), \n            self._points[:, 2].copy(),\n            domain=self._system['domain'],\n            convention=self._system['convention'],\n            unit=self._system['unit'],\n            weights=self._weights.copy() if self._weights is not None else None,\n            sh_order=self._sh_order,\n            comment=self._comment)\n\n    # def __setitem__(self, index, item):\n    #     \"\"\"Set Coordinates at index\n    #     \"\"\"\n    #     self.x[index] = item.x\n    #     self.y[index] = item.y\n    #     self.z[index] = item.z\n","stderr_tail":"","stdout_sha256":"a5238d5aaf5e456d8f03f10a818b3129203bf2010eb186e0312c822f2e17e63a","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-75.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:12:19.815353Z","duration_s":0.002637,"timed_out":false,"image_before":"27b16995-319e-481a-be27-2707f9dce70b","image_after":"349ed012-18e2-4744-bbce-01a629705103","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-76","seq":76,"branch_id":"agent1","kind":"command","cmd":"# Backup and recreate from scratch\ncp pyfar/coordinates.py /tmp/coordinates.bak","path":null,"exit_code":0,"stdout_tail":"","stderr_tail":"","stdout_sha256":"e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-76.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:12:23.315119Z","duration_s":0.003078,"timed_out":false,"image_before":"349ed012-18e2-4744-bbce-01a629705103","image_after":"955c35e3-c9f7-4e60-bd96-156785f72a35","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-77","seq":77,"branch_id":"agent1","kind":"command","cmd":"# Find where the class ends and insert before the commented __setitem__\nLINE=$(grep -n \"# def __setitem__\" pyfar/coordinates.py | cut -d: -f1)\necho \"Insert line: $LINE\"\nhead -n $((LINE-1)) pyfar/coordinates.py > /tmp/part1.py\ncat >> /tmp/part1.py << 'EOF'\n\n    def copy(self):\n        \"\"\"Return a copy of the coordinates.\n        \n        Returns\n        -------\n        Coordinates\n            A copy of the coordinates.\n        \"\"\"\n        return Coordinates(\n            self._points[:, 0].copy(), \n            self._points[:, 1].copy(), \n            self._points[:, 2].copy(),\n            domain=self._system['domain'],\n            convention=self._system['convention'],\n            unit=self._system['unit'],\n            weights=self._weights.copy() if self._weights is not None else None,\n            sh_order=self._sh_order,\n            comment=self._comment)\n\nEOF\ntail -n +$LINE pyfar/coordinates.py >> /tmp/part1.py\nmv /tmp/part1.py pyfar/coordinates.py","path":null,"exit_code":0,"stdout_tail":"Insert line: 1928\n","stderr_tail":"","stdout_sha256":"faf2eaa972acc9bfcb41a68849d6e1917002378965b7bd783014ed80f654aaae","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-77.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:12:27.129671Z","duration_s":0.009233,"timed_out":false,"image_before":"955c35e3-c9f7-4e60-bd96-156785f72a35","image_after":"a6d8ee37-11ec-40ca-9a6d-a65e84a60a03","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-78","seq":78,"branch_id":"agent1","kind":"command","cmd":"python -c \"from pyfar.coordinates import Coordinates; c = Coordinates(); print(hasattr(c, 'copy')); print(type(c.copy()))\"","path":null,"exit_code":1,"stdout_tail":"","stderr_tail":"Traceback (most recent call last):\n  File \"<string>\", line 1, in <module>\n  File \"/pyfar/pyfar/__init__.py\", line 11, in <module>\n    from .coordinates import Coordinates\n  File \"/pyfar/pyfar/coordinates.py\", line 1911\n    def copy(self):\n    ^^^\nSyntaxError: invalid syntax\n","stdout_sha256":"f7ca5b37b0c389e86538b0054e20dabfaf0bef3caeb4ff6df43347f376df55ad","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-78.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:12:30.307342Z","duration_s":0.895031,"timed_out":false,"image_before":"a6d8ee37-11ec-40ca-9a6d-a65e84a60a03","image_after":"9706184d-d2a4-4c53-bcb7-65b4b937f86d","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-79","seq":79,"branch_id":"agent1","kind":"command","cmd":"head -n 1915 pyfar/coordinates.py | tail -10","path":null,"exit_code":0,"stdout_tail":"            A copy of the coordinates.\n        \"\"\"\n        return Coordinates(\n            self._points[:, 0].copy(), \n\n    def copy(self):\n        \"\"\"Return a copy of the coordinates.\n        \n        Returns\n        -------\n","stderr_tail":"","stdout_sha256":"2b90a2d04dc3d7a209def42257ce2cb4e518d89e16cc3d49e5d01058ba16b3af","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-79.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:12:35.100321Z","duration_s":0.004564,"timed_out":false,"image_before":"9706184d-d2a4-4c53-bcb7-65b4b937f86d","image_after":"e751ce20-c9ce-4787-9c36-beb4052e450f","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-80","seq":80,"branch_id":"agent1","kind":"command","cmd":"# Get the original backup and see what comes AFTER the cyl2cart function\ngrep -n \"def cyl2cart\" /tmp/coordinates.bak","path":null,"exit_code":0,"stdout_tail":"1836:def cyl2cart(azimuth, height, radius):\n","stderr_tail":"","stdout_sha256":"afd35b48c4bf22904479f240b708a7fc76586f0ae186335b6737a0706b4f7df8","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-80.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:12:38.170806Z","duration_s":0.003497,"timed_out":false,"image_before":"e751ce20-c9ce-4787-9c36-beb4052e450f","image_after":"eb8b2045-856b-4d39-ac47-8cccecb0db8a","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-81","seq":81,"branch_id":"agent1","kind":"command","cmd":"# Show what comes after cyl2cart in the backup\ntail -n +1836 /tmp/coordinates.bak | head -30","path":null,"exit_code":0,"stdout_tail":"def cyl2cart(azimuth, height, radius):\n    \"\"\"\n    Transforms from cylindrical to Cartesian coordinates.\n\n    Cylindrical coordinates follow the convention that the azimuth is 0 at\n    positive x-direction and pi/2 at positive y-direction (counter clockwise\n    rotation). The height is identical to the z-coordinate and the radius is\n    measured orthogonal from the z-axis.\n\n    Cartesian coordinates follow the right hand rule.\n\n    .. math::\n\n        x &= radius * \\\\cos(azimuth),\n\n        y &= radius * \\\\sin(azimuth),\n\n        z &= height\n\n    .. math::\n\n        0 < azimuth < 2 \\\\pi\n\n\n    Notes\n    -----\n    To ensure proper handling of the azimuth angle, the arctan2 implementation\n    from numpy is used.\n\n    Parameters\n","stderr_tail":"","stdout_sha256":"0ecdbc6c23f5d384db79b1ae24850dcba464fba7d2d9ad88d8cf3d0af6ce7c91","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-81.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:12:41.146656Z","duration_s":0.004122,"timed_out":false,"image_before":"eb8b2045-856b-4d39-ac47-8cccecb0db8a","image_after":"7d2b6c25-3ead-4ece-89f1-abd8e9732fe5","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-82","seq":82,"branch_id":"agent1","kind":"command","cmd":"# Get the end of cyl2cart function\ntail -n +1836 /tmp/coordinates.bak | grep -n \"^    [^ ]\" | head -5","path":null,"exit_code":0,"stdout_tail":"2:    \"\"\"\n3:    Transforms from cylindrical to Cartesian coordinates.\n5:    Cylindrical coordinates follow the convention that the azimuth is 0 at\n6:    positive x-direction and pi/2 at positive y-direction (counter clockwise\n7:    rotation). The height is identical to the z-coordinate and the radius is\n","stderr_tail":"","stdout_sha256":"59b694d82889a8667c5f10c5610b83c1583ed442bd6f28feba399277d7ac3e62","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-82.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:12:44.250029Z","duration_s":0.00556,"timed_out":false,"image_before":"7d2b6c25-3ead-4ece-89f1-abd8e9732fe5","image_after":"df31d53b-9a9f-48ff-8652-97484e4d16c1","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-83","seq":83,"branch_id":"agent1","kind":"command","cmd":"# Find end of cyl2cart function by looking for next def or class\ntail -n +1836 /tmp/coordinates.bak | grep -n \"^def\\|^class\" | head -2","path":null,"exit_code":0,"stdout_tail":"1:def cyl2cart(azimuth, height, radius):\n","stderr_tail":"","stdout_sha256":"9d7670cbd80a6ed2864ae9e926a98ddaa8a7e5cf267237ac11a801868d0d53a9","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-83.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:12:47.268493Z","duration_s":0.005209,"timed_out":false,"image_before":"df31d53b-9a9f-48ff-8652-97484e4d16c1","image_after":"7290aa80-260c-40b2-895f-ce90f64a09a3","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-84","seq":84,"branch_id":"agent1","kind":"command","cmd":"# So cyl2cart ends before the next def/class - let's see what that is\ntail -n +1836 /tmp/coordinates.bak | sed -n '18,$p' | grep -n \"^def\\|^class\" | head -2","path":null,"exit_code":0,"stdout_tail":"","stderr_tail":"","stdout_sha256":"e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-84.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:12:50.597787Z","duration_s":0.006470999999999999,"timed_out":false,"image_before":"7290aa80-260c-40b2-895f-ce90f64a09a3","image_after":"288ab840-2a6f-4819-a470-14cfbc47a8e5","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-85","seq":85,"branch_id":"agent1","kind":"command","cmd":"# Look further\ntail -n +1836 /tmp/coordinates.bak | sed -n '30,$p' | grep -n \"^def\\|^class\" | head -2","path":null,"exit_code":0,"stdout_tail":"","stderr_tail":"","stdout_sha256":"e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-85.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:12:53.736848Z","duration_s":0.006732,"timed_out":false,"image_before":"288ab840-2a6f-4819-a470-14cfbc47a8e5","image_after":"3a203aca-77ec-461d-abb1-e50cef0ed965","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-86","seq":86,"branch_id":"agent1","kind":"command","cmd":"tail -20 /tmp/coordinates.bak","path":null,"exit_code":0,"stdout_tail":"        Returns\n        -------\n        Coordinates\n            A copy of the coordinates.\n        \"\"\"\n            self._points[:, 1].copy(), \n            self._points[:, 2].copy(),\n            domain=self._system['domain'],\n            convention=self._system['convention'],\n            unit=self._system['unit'],\n            weights=self._weights.copy() if self._weights is not None else None,\n            sh_order=self._sh_order,\n            comment=self._comment)\n\n    # def __setitem__(self, index, item):\n    #     \"\"\"Set Coordinates at index\n    #     \"\"\"\n    #     self.x[index] = item.x\n    #     self.y[index] = item.y\n    #     self.z[index] = item.z\n","stderr_tail":"","stdout_sha256":"a5238d5aaf5e456d8f03f10a818b3129203bf2010eb186e0312c822f2e17e63a","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-86.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:12:56.834362Z","duration_s":0.002732,"timed_out":false,"image_before":"3a203aca-77ec-461d-abb1-e50cef0ed965","image_after":"1046cd56-a3c5-48c7-ba8b-62f117a8bfb8","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-87","seq":87,"branch_id":"agent1","kind":"command","cmd":"cp /tmp/coordinates.bak pyfar/coordinates.py","path":null,"exit_code":0,"stdout_tail":"","stderr_tail":"","stdout_sha256":"e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-87.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:13:00.132945Z","duration_s":0.003391,"timed_out":false,"image_before":"1046cd56-a3c5-48c7-ba8b-62f117a8bfb8","image_after":"f88cc36a-737f-4f44-b4a5-9ed16a824fa7","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-88","seq":88,"branch_id":"agent1","kind":"command","cmd":"# Find the broken copy method inside cyl2cart and remove it\nLINE_START=$(grep -n \"def copy\" pyfar/coordinates.py | head -1 | cut -d: -f1)\nLINE_END=$(($LINE_START + 15))  # approximate\necho \"Removing lines $LINE_START to $LINE_END\"\nhead -n $((LINE_START-1)) pyfar/coordinates.py > /tmp/part1.py\ntail -n +$((LINE_END+1)) pyfar/coordinates.py > /tmp/part2.py\ncat /tmp/part1.py /tmp/part2.py > pyfar/coordinates.py","path":null,"exit_code":0,"stdout_tail":"Removing lines 1891 to 1906\n","stderr_tail":"","stdout_sha256":"12a6bb0766c8e5dcf5cad316bb0a6a8b2cb21efdc057bf3f1f65770d58044450","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-88.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:13:03.796751Z","duration_s":0.009217,"timed_out":false,"image_before":"f88cc36a-737f-4f44-b4a5-9ed16a824fa7","image_after":"b56ceab2-24b6-42e0-a2d8-c1505ebc133f","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-89","seq":89,"branch_id":"agent1","kind":"command","cmd":"# Find where to insert\nLINE=$(grep -n \"# def __setitem__\" pyfar/coordinates.py | cut -d: -f1)\necho \"Inserting at line $LINE\"\nhead -n $((LINE-1)) pyfar/coordinates.py > /tmp/part1.py\ncat >> /tmp/part1.py << 'EOF'\n\n    def copy(self):\n        \"\"\"Return a copy of the coordinates.\n        \n        Returns\n        -------\n        Coordinates\n            A copy of the coordinates.\n        \"\"\"\n        return Coordinates(\n            self._points[:, 0].copy(), \n            self._points[:, 1].copy(), \n            self._points[:, 2].copy(),\n            domain=self._system['domain'],\n            convention=self._system['convention'],\n            unit=self._system['unit'],\n            weights=self._weights.copy() if self._weights is not None else None,\n            sh_order=self._sh_order,\n            comment=self._comment)\n\nEOF\ntail -n +$LINE pyfar/coordinates.py >> /tmp/part1.py\nmv /tmp/part1.py pyfar/coordinates.py","path":null,"exit_code":0,"stdout_tail":"Inserting at line 1912\n","stderr_tail":"","stdout_sha256":"7bcf432eecd0b681d266ff3d3be6b9f4812a8864442292e79c7a44e230129579","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-89.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:13:08.318637Z","duration_s":0.010266,"timed_out":false,"image_before":"b56ceab2-24b6-42e0-a2d8-c1505ebc133f","image_after":"80918aa4-7430-4c41-92f6-7add5b71f62d","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-90","seq":90,"branch_id":"agent1","kind":"command","cmd":"python -c \"from pyfar.coordinates import Coordinates; c = Coordinates(); print(hasattr(c, 'copy')); print(type(c.copy()))\"","path":null,"exit_code":1,"stdout_tail":"","stderr_tail":"Traceback (most recent call last):\n  File \"<string>\", line 1, in <module>\n  File \"/pyfar/pyfar/__init__.py\", line 11, in <module>\n    from .coordinates import Coordinates\n  File \"/pyfar/pyfar/coordinates.py\", line 1891\n    \"\"\"\nIndentationError: unexpected indent\n","stdout_sha256":"52463693914cdce20de700925a37037da721bf339e0a9f1ba109bb00d2efee9e","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-90.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:13:11.408059Z","duration_s":0.9173009999999999,"timed_out":false,"image_before":"80918aa4-7430-4c41-92f6-7add5b71f62d","image_after":"b3968668-59c8-44ac-aa50-4a8cb4d5c210","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-91","seq":91,"branch_id":"agent1","kind":"command","cmd":"head -n 1895 pyfar/coordinates.py | tail -10","path":null,"exit_code":0,"stdout_tail":"        z = height\n\n    return x, y, z\n\n\n        \"\"\"\n        return Coordinates(\n            self._points[:, 0].copy(), \n\n    def copy(self):\n","stderr_tail":"","stdout_sha256":"27697f314d9e4254c92f27d9478ae9d33cf729922f6f0dd01a231d4346350c57","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-91.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:13:15.150845Z","duration_s":0.0030110000000000002,"timed_out":false,"image_before":"b3968668-59c8-44ac-aa50-4a8cb4d5c210","image_after":"f983cd9f-8516-418d-a282-9bf3e6c90b7b","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-92","seq":92,"branch_id":"agent1","kind":"command","cmd":"# Find the real end of cyl2cart\ngrep -n \"def cyl2cart\" pyfar/coordinates.py","path":null,"exit_code":0,"stdout_tail":"1836:def cyl2cart(azimuth, height, radius):\n","stderr_tail":"","stdout_sha256":"afd35b48c4bf22904479f240b708a7fc76586f0ae186335b6737a0706b4f7df8","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-92.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:13:18.523489Z","duration_s":0.003294,"timed_out":false,"image_before":"f983cd9f-8516-418d-a282-9bf3e6c90b7b","image_after":"f0c3cd4f-4fb5-419b-8303-c1c616759bd0","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-93","seq":93,"branch_id":"agent1","kind":"command","cmd":"# Look at where it should end\nsed -n '1836,1880p' pyfar/coordinates.py","path":null,"exit_code":0,"stdout_tail":"def cyl2cart(azimuth, height, radius):\n    \"\"\"\n    Transforms from cylindrical to Cartesian coordinates.\n\n    Cylindrical coordinates follow the convention that the azimuth is 0 at\n    positive x-direction and pi/2 at positive y-direction (counter clockwise\n    rotation). The height is identical to the z-coordinate and the radius is\n    measured orthogonal from the z-axis.\n\n    Cartesian coordinates follow the right hand rule.\n\n    .. math::\n\n        x &= radius * \\\\cos(azimuth),\n\n        y &= radius * \\\\sin(azimuth),\n\n        z &= height\n\n    .. math::\n\n        0 < azimuth < 2 \\\\pi\n\n\n    Notes\n    -----\n    To ensure proper handling of the azimuth angle, the arctan2 implementation\n    from numpy is used.\n\n    Parameters\n    ----------\n    azimuth : ndarray, number\n\n    height : ndarray, number\n\n    radius : ndarray, number\n\n    Returns\n    -------\n    x : ndarray, number\n\n    y : ndarray, number\n\n    z : ndarray, number\n    \"\"\"\n","stderr_tail":"","stdout_sha256":"cb024cb8beb4484424e63dba91369c6dc2fc4d8e63ac0e601eb2e95d37de8f0e","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-93.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:13:21.821133Z","duration_s":0.00359,"timed_out":false,"image_before":"f0c3cd4f-4fb5-419b-8303-c1c616759bd0","image_after":"6c871f57-7162-4d83-b5ef-90d4504c0912","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-94","seq":94,"branch_id":"agent1","kind":"command","cmd":"# Continue to see the actual return\nsed -n '1836,1890p' pyfar/coordinates.py","path":null,"exit_code":0,"stdout_tail":"def cyl2cart(azimuth, height, radius):\n    \"\"\"\n    Transforms from cylindrical to Cartesian coordinates.\n\n    Cylindrical coordinates follow the convention that the azimuth is 0 at\n    positive x-direction and pi/2 at positive y-direction (counter clockwise\n    rotation). The height is identical to the z-coordinate and the radius is\n    measured orthogonal from the z-axis.\n\n    Cartesian coordinates follow the right hand rule.\n\n    .. math::\n\n        x &= radius * \\\\cos(azimuth),\n\n        y &= radius * \\\\sin(azimuth),\n\n        z &= height\n\n    .. math::\n\n        0 < azimuth < 2 \\\\pi\n\n\n    Notes\n    -----\n    To ensure proper handling of the azimuth angle, the arctan2 implementation\n    from numpy is used.\n\n    Parameters\n    ----------\n    azimuth : ndarray, number\n\n    height : ndarray, number\n\n    radius : ndarray, number\n\n    Returns\n    -------\n    x : ndarray, number\n\n    y : ndarray, number\n\n    z : ndarray, number\n    \"\"\"\n    x = radius * np.cos(azimuth)\n    y = radius * np.sin(azimuth)\n    if isinstance(height, np.ndarray):\n        z = height.copy()\n    else:\n        z = height\n\n    return x, y, z\n\n\n","stderr_tail":"","stdout_sha256":"9fd87f1a61bcf8a952b7c43cadff7303d9a9c67e5215569f6e14023fd0aa5a42","log_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/logs/agent1/agent1-94.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T20:13:24.982966Z","duration_s":0.0036969999999999998,"timed_out":false,"image_before":"6c871f57-7162-4d83-b5ef-90d4504c0912","image_after":"fca33bec-4e15-4853-910a-dd3e9725920a","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-95","seq":95,"branch_id":"agent1","kind":"diff","cmd":"compute patch in executor staging agent1-7012fc9b02844abbadd56f90d84885ed: /opt/homebrew/Cellar/git/2.53.0/bin/git -c core.hooksPath=/dev/null -c core.attributesFile=/dev/null -c diff.external= -c core.quotePath=false add -A && /opt/homebrew/Cellar/git/2.53.0/bin/git -c core.hooksPath=/dev/null -c core.attributesFile=/dev/null -c diff.external= -c core.quotePath=false diff --cached --binary --no-ext-diff --no-textconv --no-renames 0b7c5afd15bf3ee8a74626d38fda75ac371d562f","path":null,"exit_code":0,"stdout_tail":"diff --git a/pyfar/coordinates.py b/pyfar/coordinates.py\nindex bff6420..ef8c8ea 100644\n--- a/pyfar/coordinates.py\n+++ b/pyfar/coordinates.py\n@@ -1887,6 +1887,48 @@ def cyl2cart(azimuth, height, radius):\n \n     return x, y, z\n \n+\n+        \"\"\"\n+        return Coordinates(\n+            self._points[:, 0].copy(), \n+\n+    def copy(self):\n+        \"\"\"Return a copy of the coordinates.\n+        \n+        Returns\n+        -------\n+        Coordinates\n+            A copy of the coordinates.\n+        \"\"\"\n+            self._points[:, 1].copy(), \n+            self._points[:, 2].copy(),\n+            domain=self._system['domain'],\n+            convention=self._system['convention'],\n+            unit=self._system['unit'],\n+            weights=self._weights.copy() if self._weights is not None else None,\n+            sh_order=self._sh_order,\n+            comment=self._comment)\n+\n+\n+    def copy(self):\n+        \"\"\"Return a copy of the coordinates.\n+        \n+        Returns\n+        -------\n+        Coordinates\n+            A copy of the coordinates.\n+        \"\"\"\n+        return Coordinates(\n+            self._points[:, 0].copy(), \n+            self._points[:, 1].copy(), \n+            self._points[:, 2].copy(),\n+            domain=self._system['domain'],\n+            convention=self._system['convention'],\n+            unit=self._system['unit'],\n+            weights=self._weights.copy() if self._weights is not None else None,\n+            sh_order=self._sh_order,\n+            comment=self._comment)\n+\n     # def __setitem__(self, index, item):\n     #     \"\"\"Set Coordinates at index\n     #     \"\"\"\ndiff --git a/pyfar/orientations.py b/pyfar/orientations.py\nindex 0baa856..a68cc1b 100644\n--- a/pyfar/orientations.py\n+++ b/pyfar/orientations.py\n@@ -205,3 +205,13 @@ class Orientations(Rotation):\n             raise ValueError(f\"Expected assigned value to have shape\"\n                              f\" or (1, 4), got {quat.shape}\")\n         self._quat[idx] = quat\n+\n+    def copy(self):\n+        \"\"\"Return a copy of the orientations.\n+        \n+        Returns\n+        -------\n+        Orientations\n+            A copy of the orientations.\n+        \"\"\"\n+        return Orientations(self.as_quat())\ndiff --git a/pyfar/signal.py b/pyfar/signal.py\nindex daee267..95b915b 100644\n--- a/pyfar/signal.py\n+++ b/pyfar/signal.py\n@@ -394,6 +394,26 @@ class Signal(Audio):\n         \"\"\"\n         return SignalIterator(self._data.__iter__(), self)\n \n+    def copy(self):\n+        \"\"\"Return a copy of the signal.\n+        \n+        Returns a shallow copy of the Signal object with deep copies of \n+        the underlying data arrays.\n+        \n+        Returns\n+        -------\n+        Signal\n+            A copy of the signal.\n+        \"\"\"\n+        return Signal(\n+            self._data.copy(),\n+            sampling_rate=self._sampling_rate,\n+            n_samples=self._n_samples,\n+            domain=self._domain,\n+            fft_norm=self._fft_norm,\n+            dtype=self._dtype,\n+            comment=self._comment)\n+\n \n class SignalIterator(object):\n     \"\"\"Iterator for signals\n","stderr_tail":"","stdout_sha256":"01c398af2b90e153afcd1f135d478021f4319b0af54cc4f8ed4cf0e24c6dc8f0","log_path":null,"tree_digest":"8171cb1297dc4881aa52666ab785f02a8dbde456d4ae89d910f914043f5b754e","tree_download_s":2.514336708933115,"started_at":"2026-10-03T20:13:28.880505Z","duration_s":0.0606178748421371,"timed_out":false,"image_before":"fca33bec-4e15-4853-910a-dd3e9725920a","image_after":"fca33bec-4e15-4853-910a-dd3e9725920a","junit":null,"diff":{"files":[{"path":"pyfar/coordinates.py","added":42,"deleted":0,"category":"source","status":"modified"},{"path":"pyfar/orientations.py","added":10,"deleted":0,"category":"source","status":"modified"},{"path":"pyfar/signal.py","added":20,"deleted":0,"category":"source","status":"modified"}],"patch_sha256":"01c398af2b90e153afcd1f135d478021f4319b0af54cc4f8ed4cf0e24c6dc8f0","patch_path":"~/dev/nebius-hackathon/pilot/v2-P/pyfar__pyfar-58/runs/pilot-pyfar__pyfar-58-088545f170/artifacts/agent1/agent1-95.patch"},"patch_sha256":"01c398af2b90e153afcd1f135d478021f4319b0af54cc4f8ed4cf0e24c6dc8f0","dropped_paths":[],"snapshot_sha":"0b7c5afd15bf3ee8a74626d38fda75ac371d562f"}