{"receipt_id":"agent1-1","seq":1,"branch_id":"agent1","kind":"command","cmd":"git ls-files -z","path":null,"exit_code":0,"stdout_tail":".github/ISSUE_TEMPLATE/bug_report.md\u0000.github/ISSUE_TEMPLATE/feature_request.md\u0000.github/ISSUE_TEMPLATE/new-api-endpoint.md\u0000.github/PULL_REQUEST_TEMPLATE/new-api-endpoint.md\u0000.gitignore\u0000.readthedocs.yml\u0000.travis.yml\u0000AUTHORS.md\u0000CONTRIBUTING.md\u0000HISTORY.md\u0000LICENSE\u0000MANIFEST.in\u0000README.md\u0000docs/Makefile\u0000docs/_static/collapsible_container.css\u0000docs/_templates/page.html\u0000docs/authors.rst\u0000docs/conf.py\u0000docs/contributing.rst\u0000docs/endpoints.rst\u0000docs/endpoints_table.md\u0000docs/general_usage.rst\u0000docs/history.rst\u0000docs/images/taxon_autocomplete.png\u0000docs/index.rst\u0000docs/reference.rst\u0000pyinaturalist/__init__.py\u0000pyinaturalist/api_docs.py\u0000pyinaturalist/api_requests.py\u0000pyinaturalist/constants.py\u0000pyinaturalist/exceptions.py\u0000pyinaturalist/forge_utils.py\u0000pyinaturalist/node_api.py\u0000pyinaturalist/request_params.py\u0000pyinaturalist/response_format.py\u0000pyinaturalist/rest_api.py\u0000pyproject.toml\u0000setup.cfg\u0000setup.py\u0000test/__init__.py\u0000test/conftest.py\u0000test/manual_tests/__init__.py\u0000test/manual_tests/obs_crud_test.py\u0000test/sample_data/add_photo_to_observation.json\u0000test/sample_data/create_observation_fail.json\u0000test/sample_data/create_observation_result.json\u0000test/sample_data/get_all_observation_fields.json\u0000test/sample_data/get_all_observation_species_counts_ex_results.json\u0000test/sample_data/get_all_observation_species_counts_page1.json\u0000test/sample_data/get_all_observation_species_counts_page2.json\u0000test/sample_data/get_nonexistent_observation.json\u0000test/sample_data/get_observation.json\u0000test/sample_data/get_observation_fields_page1.json\u0000test/sample_data/get_observation_fields_page2.json\u0000test/sample_data/get_observation_species_counts.json\u0000test/sample_data/get_observations.atom\u0000test/sample_data/get_observations.csv\u0000test/sample_data/get_observations.dwc\u0000test/sample_data/get_observations.geojson\u0000test/sample_data/get_observations.js\u0000test/sample_data/get_observations.json\u0000test/sample_data/get_observations.kml\u0000test/sample_data/get_observations_node_page1.json\u0000test/sample_data/get_observations_node_page2.json\u0000test/sample_data/get_places_autocomplete.json\u0000test/sample_data/get_places_by_id.json\u0000test/sample_data/get_places_nearby.json\u0000test/sample_data/get_projects.json\u0000test/sample_data/get_projects_by_id.json\u0000test/sample_data/get_taxa.json\u0000test/sample_data/get_taxa_autocomplete.json\u0000test/sample_data/get_taxa_autocomplete_minified.json\u0000test/sample_data/get_taxa_by_id.json\u0000test/sample_data/obs_image.jpg\u0000test/sample_data/put_observation_field_value_result.json\u0000test/sample_data/update_observation_result.json\u0000test/test_api_requests.py\u0000test/test_forge_utils.py\u0000test/test_node_api.py\u0000test/test_request_params.py\u0000test/test_rest_api.py\u0000test/test_version.py\u0000tox.ini\u0000","stderr_tail":"","stdout_sha256":"8e6d005cb61623c80575905539087d63332c8682c13c764836b64ee22a5b196d","log_path":"~/dev/nebius-hackathon/pilot/v2-arm-lightning/niconoe__pyinaturalist-72/runs/pilot-niconoe__pyinaturalist-72-760c33eda0/logs/agent1/agent1-1.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T21:48:19.495875Z","duration_s":0.003695,"timed_out":false,"image_before":"218a1633-0f37-4404-bf70-ef109467272b","image_after":"be55244d-d5d5-4d6c-8488-c14c92570767","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-2","seq":2,"branch_id":"agent1","kind":"write","cmd":"/opt/receipts-01017cf1749d4ecfa50a4c3d56cd17f2/bin/busybox sh -c 'mkdir -p /pyinaturalist/pyinaturalist && cp /opt/receipts-01017cf1749d4ecfa50a4c3d56cd17f2/incoming/f458aaf0117d2809c6af24ebf64aaa97241ad2d887f63ea14e91b1574c04987f /pyinaturalist/pyinaturalist/rest_api.py'","path":"pyinaturalist/rest_api.py","exit_code":0,"stdout_tail":"","stderr_tail":"","stdout_sha256":"f458aaf0117d2809c6af24ebf64aaa97241ad2d887f63ea14e91b1574c04987f","log_path":"~/dev/nebius-hackathon/pilot/v2-arm-lightning/niconoe__pyinaturalist-72/runs/pilot-niconoe__pyinaturalist-72-760c33eda0/logs/agent1/agent1-2.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T21:48:33.838142Z","duration_s":0.004561,"timed_out":false,"image_before":"be55244d-d5d5-4d6c-8488-c14c92570767","image_after":"bf912605-79b2-402a-9dd8-a41bcf8803ff","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-3","seq":3,"branch_id":"agent1","kind":"command","cmd":"cd /pyinaturalist && python -m pytest test/test_rest_api.py::test_get_access_token__envars test/test_rest_api.py::test_get_access_token__mixed_args_and_envars test/test_rest_api.py::test_get_access_token__missing_creds -v 2>&1","path":null,"exit_code":0,"stdout_tail":"============================= test session starts ==============================\nplatform linux -- Python 3.10.19, pytest-9.0.2, pluggy-1.6.0 -- /usr/local/bin/python\ncachedir: .pytest_cache\nrootdir: /pyinaturalist\nconfigfile: pyproject.toml\nplugins: asyncio-1.3.0, cov-7.0.0, sugar-1.1.1, xdist-3.8.0, requests-mock-1.12.1\nasyncio: mode=strict, debug=False, asyncio_default_fixture_loop_scope=None, asyncio_default_test_loop_scope=function\ncollecting ... collected 3 items\n\ntest/test_rest_api.py::test_get_access_token__envars PASSED              [ 33%]\ntest/test_rest_api.py::test_get_access_token__mixed_args_and_envars PASSED [ 66%]\ntest/test_rest_api.py::test_get_access_token__missing_creds PASSED       [100%]\n\n============================== 3 passed in 0.06s ===============================\n","stderr_tail":"","stdout_sha256":"fe481e206536d9b8cca0dfd80f999a2be6953293b1c4497dc6e01b2f6d6aaa46","log_path":"~/dev/nebius-hackathon/pilot/v2-arm-lightning/niconoe__pyinaturalist-72/runs/pilot-niconoe__pyinaturalist-72-760c33eda0/logs/agent1/agent1-3.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T21:48:36.481016Z","duration_s":0.36341399999999996,"timed_out":false,"image_before":"bf912605-79b2-402a-9dd8-a41bcf8803ff","image_after":"87758a04-e963-4a02-a1a8-0d235d94cbbc","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-4","seq":4,"branch_id":"agent1","kind":"command","cmd":"cd /pyinaturalist && python -m pytest test/test_rest_api.py -v 2>&1","path":null,"exit_code":0,"stdout_tail":"============================= test session starts ==============================\nplatform linux -- Python 3.10.19, pytest-9.0.2, pluggy-1.6.0 -- /usr/local/bin/python\ncachedir: .pytest_cache\nrootdir: /pyinaturalist\nconfigfile: pyproject.toml\nplugins: asyncio-1.3.0, cov-7.0.0, sugar-1.1.1, xdist-3.8.0, requests-mock-1.12.1\nasyncio: mode=strict, debug=False, asyncio_default_fixture_loop_scope=None, asyncio_default_test_loop_scope=function\ncollecting ... collected 27 items\n\ntest/test_rest_api.py::test_get_observations[atom] PASSED                [  3%]\ntest/test_rest_api.py::test_get_observations[csv] PASSED                 [  7%]\ntest/test_rest_api.py::test_get_observations[dwc] PASSED                 [ 11%]\ntest/test_rest_api.py::test_get_observations[json] PASSED                [ 14%]\ntest/test_rest_api.py::test_get_observations[kml] PASSED                 [ 18%]\ntest/test_rest_api.py::test_get_observations[widget] PASSED              [ 22%]\ntest/test_rest_api.py::test_get_observations__invalid_format[geojson] PASSED [ 25%]\ntest/test_rest_api.py::test_get_observations__invalid_format[yaml] PASSED [ 29%]\ntest/test_rest_api.py::test_get_observation_fields PASSED                [ 33%]\ntest/test_rest_api.py::test_get_all_observation_fields PASSED            [ 37%]\ntest/test_rest_api.py::test_get_all_observation_fields_noparam PASSED    [ 40%]\ntest/test_rest_api.py::test_put_observation_field_values PASSED          [ 44%]\ntest/test_rest_api.py::test_get_access_token PASSED                      [ 48%]\ntest/test_rest_api.py::test_get_access_token__envars PASSED              [ 51%]\ntest/test_rest_api.py::test_get_access_token__mixed_args_and_envars PASSED [ 55%]\ntest/test_rest_api.py::test_get_access_token__missing_creds PASSED       [ 59%]\ntest/test_rest_api.py::test_get_access_token__invalid_creds PASSED       [ 62%]\ntest/test_rest_api.py::test_update_observation PASSED                    [ 66%]\ntest/test_rest_api.py::test_update_observation__local_photo PASSED       [ 70%]\ntest/test_rest_api.py::test_update_nonexistent_observation PASSED        [ 74%]\ntest/test_rest_api.py::test_update_observation_not_mine PASSED           [ 77%]\ntest/test_rest_api.py::test_create_observation PASSED                    [ 81%]\ntest/test_rest_api.py::test_create_observation__local_photo PASSED       [ 85%]\ntest/test_rest_api.py::test_create_observation_fail PASSED               [ 88%]\ntest/test_rest_api.py::test_add_photo_to_observation PASSED              [ 92%]\ntest/test_rest_api.py::test_delete_observation PASSED                    [ 96%]\ntest/test_rest_api.py::test_delete_unexisting_observation PASSED         [100%]\n\n============================== 27 passed in 2.11s ==============================\n","stderr_tail":"","stdout_sha256":"42e22e5a01805364e9f87c80f1c0cd852a7185914edad98ab9cfd44fe637a01a","log_path":"~/dev/nebius-hackathon/pilot/v2-arm-lightning/niconoe__pyinaturalist-72/runs/pilot-niconoe__pyinaturalist-72-760c33eda0/logs/agent1/agent1-4.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T21:48:39.960814Z","duration_s":0.31332,"timed_out":false,"image_before":"87758a04-e963-4a02-a1a8-0d235d94cbbc","image_after":"bd2fb8cc-64c9-41aa-a1a1-5e8ce5e39547","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-5","seq":5,"branch_id":"agent1","kind":"command","cmd":"cd /pyinaturalist && python -m pytest --no-header -rA --tb=line --color=no -p no:cacheprovider -W ignore::DeprecationWarning test/conftest.py test/manual_tests/obs_crud_test.py test/test_request_params.py test/test_rest_api.py 2>&1","path":null,"exit_code":0,"stdout_tail":"ime_params[q-value5-1954-02-05]\nPASSED test/test_request_params.py::test_convert_datetime_params[q-value6-1954-02-05T00:00:00-08:00]\nPASSED test/test_request_params.py::test_convert_datetime_params[q-not a datetime-not a datetime]\nPASSED test/test_request_params.py::test_convert_list_params\nPASSED test/test_request_params.py::test_convert_observation_fields\nPASSED test/test_request_params.py::test_ensure_file_obj__file_path\nPASSED test/test_request_params.py::test_ensure_file_obj__file_obj\nPASSED test/test_request_params.py::test_strip_empty_params\nPASSED test/test_request_params.py::test_validate_ids[1-1_0]\nPASSED test/test_request_params.py::test_validate_ids[1-1_1]\nPASSED test/test_request_params.py::test_validate_ids[1,2,3-1,2,3]\nPASSED test/test_request_params.py::test_validate_ids[value3-1,2,3]\nPASSED test/test_request_params.py::test_validate_ids[value4-100000,200000]\nPASSED test/test_request_params.py::test_validate_ids__invalid[NaN]\nPASSED test/test_request_params.py::test_validate_ids__invalid[]\nPASSED test/test_request_params.py::test_validate_ids__invalid[None]\nPASSED test/test_request_params.py::test_validate_ids__invalid[value3]\nPASSED test/test_request_params.py::test_preprocess_request_params\nPASSED test/test_request_params.py::test_all_node_requests_use_param_conversion[get_all_observation_species_counts]\nPASSED test/test_request_params.py::test_all_node_requests_use_param_conversion[get_all_observations]\nPASSED test/test_request_params.py::test_all_node_requests_use_param_conversion[get_geojson_observations]\nPASSED test/test_request_params.py::test_all_node_requests_use_param_conversion[get_observation]\nPASSED test/test_request_params.py::test_all_node_requests_use_param_conversion[get_observation_species_counts]\nPASSED test/test_request_params.py::test_all_node_requests_use_param_conversion[get_observations]\nPASSED test/test_request_params.py::test_all_node_requests_use_param_conversion[get_places_autocomplete]\nPASSED test/test_request_params.py::test_all_node_requests_use_param_conversion[get_places_by_id]\nPASSED test/test_request_params.py::test_all_node_requests_use_param_conversion[get_places_nearby]\nPASSED test/test_request_params.py::test_all_node_requests_use_param_conversion[get_projects]\nPASSED test/test_request_params.py::test_all_node_requests_use_param_conversion[get_projects_by_id]\nPASSED test/test_request_params.py::test_all_node_requests_use_param_conversion[get_taxa]\nPASSED test/test_request_params.py::test_all_node_requests_use_param_conversion[get_taxa_autocomplete]\nPASSED test/test_request_params.py::test_all_node_requests_use_param_conversion[get_taxa_by_id]\nPASSED test/test_request_params.py::test_all_rest_requests_use_param_conversion[delete_observation]\nPASSED test/test_request_params.py::test_all_rest_requests_use_param_conversion[get_access_token]\nPASSED test/test_request_params.py::test_all_rest_requests_use_param_conversion[get_all_observation_fields]\nPASSED test/test_request_params.py::test_all_rest_requests_use_param_conversion[get_observation_fields]\nPASSED test/test_request_params.py::test_all_rest_requests_use_param_conversion[get_observations]\nPASSED test/test_request_params.py::test_all_rest_requests_use_param_conversion[put_observation_field_values]\nPASSED test/test_request_params.py::test_validate_multiple_choice_param\nPASSED test/test_request_params.py::test_validate_multiple_choice_params[params0]\nPASSED test/test_request_params.py::test_validate_multiple_choice_params[params1]\nPASSED test/test_request_params.py::test_validate_multiple_choice_params[params2]\nPASSED test/test_request_params.py::test_validate_multiple_choice_params[params3]\nPASSED test/test_request_params.py::test_validate_multiple_choice_params[params4]\nPASSED test/test_request_params.py::test_validate_multiple_choice_params[params5]\nPASSED test/test_request_params.py::test_validate_multiple_choice_params[params6]\nPASSED test/test_request_params.py::test_validate_multiple_choice_params[params7]\nPASSED test/test_request_params.py::test_validate_multiple_choice_params[params8]\nPASSED test/test_request_params.py::test_validate_multiple_choice_params[params9]\nPASSED test/test_request_params.py::test_validate_multiple_choice_params[params10]\nPASSED test/test_rest_api.py::test_get_observations[atom]\nPASSED test/test_rest_api.py::test_get_observations[csv]\nPASSED test/test_rest_api.py::test_get_observations[dwc]\nPASSED test/test_rest_api.py::test_get_observations[json]\nPASSED test/test_rest_api.py::test_get_observations[kml]\nPASSED test/test_rest_api.py::test_get_observations[widget]\nPASSED test/test_rest_api.py::test_get_observations__invalid_format[geojson]\nPASSED test/test_rest_api.py::test_get_observations__invalid_format[yaml]\nPASSED test/test_rest_api.py::test_get_observation_fields\nPASSED test/test_rest_api.py::test_get_all_observation_fields\nPASSED test/test_rest_api.py::test_get_all_observation_fields_noparam\nPASSED test/test_rest_api.py::test_put_observation_field_values\nPASSED test/test_rest_api.py::test_get_access_token\nPASSED test/test_rest_api.py::test_get_access_token__envars\nPASSED test/test_rest_api.py::test_get_access_token__mixed_args_and_envars\nPASSED test/test_rest_api.py::test_get_access_token__missing_creds\nPASSED test/test_rest_api.py::test_get_access_token__invalid_creds\nPASSED test/test_rest_api.py::test_update_observation\nPASSED test/test_rest_api.py::test_update_observation__local_photo\nPASSED test/test_rest_api.py::test_update_nonexistent_observation\nPASSED test/test_rest_api.py::test_update_observation_not_mine\nPASSED test/test_rest_api.py::test_create_observation\nPASSED test/test_rest_api.py::test_create_observation__local_photo\nPASSED test/test_rest_api.py::test_create_observation_fail\nPASSED test/test_rest_api.py::test_add_photo_to_observation\nPASSED test/test_rest_api.py::test_delete_observation\nPASSED test/test_rest_api.py::test_delete_unexisting_observation\n============================== 83 passed in 2.35s ==============================\n","stderr_tail":"","stdout_sha256":"93e82c076157a25a227a24d59ab99cc7c36b28b9741f4c9cfff6d198864d7acc","log_path":"~/dev/nebius-hackathon/pilot/v2-arm-lightning/niconoe__pyinaturalist-72/runs/pilot-niconoe__pyinaturalist-72-760c33eda0/logs/agent1/agent1-5.log","tree_digest":null,"tree_download_s":null,"started_at":"2026-10-03T21:48:46.087149Z","duration_s":0.5151049999999999,"timed_out":false,"image_before":"bd2fb8cc-64c9-41aa-a1a1-5e8ce5e39547","image_after":"4c2ab12d-fe16-4fe4-b891-a21983d3b60d","junit":null,"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-6","seq":6,"branch_id":"agent1","kind":"diff","cmd":"compute patch in executor staging agent1-f2bb7037732b46fcadd8bfe04b63b84d: /opt/homebrew/Cellar/git/2.53.0/bin/git -c core.hooksPath=/dev/null -c core.attributesFile=/dev/null -c diff.external= -c core.quotePath=false add -A && /opt/homebrew/Cellar/git/2.53.0/bin/git -c core.hooksPath=/dev/null -c core.attributesFile=/dev/null -c diff.external= -c core.quotePath=false diff --cached --binary --no-ext-diff --no-textconv --no-renames 820e797eee81feffe3368f686494256a9085176b","path":null,"exit_code":0,"stdout_tail":"diff --git a/pyinaturalist/rest_api.py b/pyinaturalist/rest_api.py\nindex e9edc76..d1297a3 100644\n--- a/pyinaturalist/rest_api.py\n+++ b/pyinaturalist/rest_api.py\n@@ -10,6 +10,7 @@ Functions\n     :nosignatures:\n \n \"\"\"\n+import os\n from time import sleep\n from typing import Dict, Any, List, Union\n \n@@ -39,7 +40,11 @@ from pyinaturalist.response_format import convert_lat_long_to_float\n \n \n def get_access_token(\n-    username: str, password: str, app_id: str, app_secret: str, user_agent: str = None\n+    username: str = None,\n+    password: str = None,\n+    app_id: str = None,\n+    app_secret: str = None,\n+    user_agent: str = None,\n ) -> str:\n     \"\"\"Get an access token using the user's iNaturalist username and password.\n     You still need an iNaturalist app to do this.\n@@ -51,12 +56,38 @@ def get_access_token(\n         >>> headers = {\"Authorization\": f\"Bearer {access_token}\"}\n \n     Args:\n-        username: iNaturalist username\n-        password: iNaturalist password\n-        app_id: iNaturalist application ID\n-        app_secret: iNaturalist application secret\n+        username: iNaturalist username. Can also be provided via the\n+            ``INAT_USERNAME`` environment variable.\n+        password: iNaturalist password. Can also be provided via the\n+            ``INAT_PASSWORD`` environment variable.\n+        app_id: iNaturalist application ID. Can also be provided via the\n+            ``INAT_APP_ID`` environment variable.\n+        app_secret: iNaturalist application secret. Can also be provided via the\n+            ``INAT_APP_SECRET`` environment variable.\n         user_agent: a user-agent string that will be passed to iNaturalist.\n     \"\"\"\n+    # Use provided arguments, falling back to environment variables\n+    username = username or os.environ.get(\"INAT_USERNAME\")\n+    password = password or os.environ.get(\"INAT_PASSWORD\")\n+    app_id = app_id or os.environ.get(\"INAT_APP_ID\")\n+    app_secret = app_secret or os.environ.get(\"INAT_APP_SECRET\")\n+\n+    if not all([username, password, app_id, app_secret]):\n+        missing = []\n+        if not username:\n+            missing.append(\"username\")\n+        if not password:\n+            missing.append(\"password\")\n+        if not app_id:\n+            missing.append(\"app_id\")\n+        if not app_secret:\n+            missing.append(\"app_secret\")\n+        raise AuthenticationError(\n+            f\"Missing required credentials: {', '.join(missing)}. \"\n+            \"Provide them as arguments or via environment variables \"\n+            \"(INAT_USERNAME, INAT_PASSWORD, INAT_APP_ID, INAT_APP_SECRET).\"\n+        )\n+\n     payload = {\n         \"client_id\": app_id,\n         \"client_secret\": app_secret,\n","stderr_tail":"","stdout_sha256":"c35f90ef7994b1a70b6cdd89dda7b3d8f8d9b33dbecaa3487945ae43aaa3afec","log_path":null,"tree_digest":"3862e6254f5050e9845594ba6cf4f242bc3c9c63165561a33ec992142e23247c","tree_download_s":3.322276209015399,"started_at":"2026-10-03T21:49:01.064289Z","duration_s":0.034174750093370676,"timed_out":false,"image_before":"4c2ab12d-fe16-4fe4-b891-a21983d3b60d","image_after":"4c2ab12d-fe16-4fe4-b891-a21983d3b60d","junit":null,"diff":{"files":[{"path":"pyinaturalist/rest_api.py","added":36,"deleted":5,"category":"source","status":"modified"}],"patch_sha256":"c35f90ef7994b1a70b6cdd89dda7b3d8f8d9b33dbecaa3487945ae43aaa3afec","patch_path":"~/dev/nebius-hackathon/pilot/v2-arm-lightning/niconoe__pyinaturalist-72/runs/pilot-niconoe__pyinaturalist-72-760c33eda0/artifacts/agent1/agent1-6.patch"},"patch_sha256":"c35f90ef7994b1a70b6cdd89dda7b3d8f8d9b33dbecaa3487945ae43aaa3afec","dropped_paths":[],"snapshot_sha":"820e797eee81feffe3368f686494256a9085176b"}