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passed: test_autofit/non_linear/grid/test_sensitivity/test_functionality.py::test_models_with_tuple_steps, test_autofit/non_linear/grid/test_sensitivity/test_functionality.py::test_jobs_with_tuple_steps", "id": "R1_fail_to_pass", "passed": true }, { "evidence": "12 baseline-passing tests still pass", "id": "R2_pass_to_pass", "passed": true }, { "evidence": "all 14 baseline tests collected; skips unchanged (0)", "id": "R3_no_shrink", "passed": true }, { "evidence": "patch touches 1 file(s), all in scope", "id": "R4_patch_scope", "passed": true }, { "evidence": "agent chain 0e833350-1e87-4d3b-af19-5682bac4c7a2 -> 4c08a85f-ed57-4cd3-9c25-45d8a11df2af unbroken over 14 receipt(s); witness chain 0e833350-1e87-4d3b-af19-5682bac4c7a2 -> e36b18b1-6ca7-47c3-895b-78a0d17b7801 unbroken over 2 receipt(s); applied digest matches", "id": "R5_provenance", "passed": true }, { "evidence": "claimed green; own last run: 14 passed, 0 failed", "id": "R6_claim_audit", "passed": true } ], "status": "PASS" }, "input": { "appeals": 1, "budgets": { "baseline_limit_s": 600, "verification_timeout_s": 600, "worker": { "max_completion_tokens": 96000, "max_turns": 60, "max_wall_seconds": 1500.0, "prompt_token_budget": 160000 } }, "issue": "Bug where sensitivity mapping no longer supports tuple step_size\nIn a previous issue, we made it so that the `number_of_steps` in the `Sensitivity` class could be a tuple so that different dimensions had\r\ndifferent steps:\r\n\r\n```\r\nsensitivity = af.Sensitivity(\r\n paths=paths,\r\n simulation_instance=simulation_instance,\r\n base_model=base_model,\r\n perturb_model=perturb_model,\r\n simulate_cls=SimulateImaging(mask=mask, psf=dataset.psf),\r\n base_fit_cls=BaseFit(adapt_result=result),\r\n perturb_fit_cls=PerturbFit(adapt_result=result),\r\n perturb_model_prior_func=perturb_model_prior_func,\r\n # number_of_steps=2,\r\n number_of_steps=(4, 3, 2),\r\n number_of_cores=2,\r\n)\r\n```\r\n\r\nWe have since added a function which customized the prior on sensitivity mapping:\r\n\r\n```\r\n @property\r\n def _perturb_models(self) -> Generator[AbstractPriorModel, None, None]:\r\n \"\"\"\r\n A list of models representing a perturbation at each grid square.\r\n\r\n By default models have priors with limits at the edges of a grid square.\r\n These limits can be scaled using the limit_scale variable. If the variable\r\n is 2 then the priors will have width twice the step size.\r\n \"\"\"\r\n half_step = self.limit_scale * self.step_size / 2\r\n for list_ in self._lists:\r\n limits = [\r\n (\r\n prior.value_for(max(0.0, centre - half_step)),\r\n prior.value_for(min(1.0, centre + half_step)),\r\n )\r\n for centre, prior in zip(list_, self.perturb_model.priors_ordered_by_id)\r\n ]\r\n yield self.perturb_model.with_limits(limits)\r\n```\r\n\r\nWhen a tuple is used the following error is raised:\r\n\r\n```\r\nTraceback (most recent call last):\r\n File \"/mnt/c/Users/Jammy/Code/PyAuto/autolens_workspace/scripts/imaging/advanced/subhalo/sensitivity/start_here.py\", line 618, in \r\n sensitivity_result = sensitivity.run()\r\n File \"/mnt/c/Users/Jammy/Code/PyAuto/PyAutoFit/autofit/non_linear/grid/sensitivity.py\", line 311, in run\r\n for result in process_class.run_jobs(\r\n File \"/mnt/c/Users/Jammy/Code/PyAuto/PyAutoFit/autofit/non_linear/parallel/process.py\", line 162, in run_jobs\r\n for job in jobs:\r\n File \"/mnt/c/Users/Jammy/Code/PyAuto/PyAutoFit/autofit/non_linear/grid/sensitivity.py\", line 430, in _make_jobs\r\n for number, (perturb_instance, perturb_model, label) in enumerate(\r\n File \"/mnt/c/Users/Jammy/Code/PyAuto/PyAutoFit/autofit/non_linear/grid/sensitivity.py\", line 412, in _perturb_models\r\n half_step = self.limit_scale * self.step_size / 2\r\nTypeError: unsupported operand type(s) for /: 'tuple' and 'int'\r\n```", "source": { "image": "docker.io/swerebenchv2/rhayes777-pyautofit:888-b0ec41b", "platform": "linux/amd64", "python": "python", "setup": [ "python -c 'import base64; from pathlib import Path; Path('\"'\"'/tmp/receipts-rhayes777__pyautofit-888-test.patch'\"'\"').write_bytes(base64.b64decode('\"'\"'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"git apply /tmp/receipts-rhayes777__pyautofit-888-test.patch" ], "workdir": "/PyAutoFit" }, "spec_paths": [ "test_autofit/non_linear/grid/test_sensitivity/test_functionality.py" ], "spec_tests": [ "test_autofit/non_linear/grid/test_sensitivity/test_functionality.py::test_models_with_tuple_steps", "test_autofit/non_linear/grid/test_sensitivity/test_functionality.py::test_jobs_with_tuple_steps" ], "suite_scope": "--no-header -rA --tb=line --color=no -p no:cacheprovider -W ignore::DeprecationWarning test_autofit/non_linear/grid/test_sensitivity/test_functionality.py" }, "plan": { "approach": "Modify `_perturb_models` property to handle tuple `step_size` element-wise.\n\nPlanner dropped nonexistent files: [\"autofit/non_linear/grid/sensitivity.py\"]", "files_to_edit": [], "finish_reason": "stop", "hypothesis": "The bug occurs because when `step_size` is a tuple, `_perturb_models` tries to multiply a tuple by scalar `limit_scale`, causing a TypeError during division.", "usage": { "completion": 88, "prompt": 11037, "reasoning": 0 } }, "selected_patch_path": "attempts/1/filtered.diff", "snapshot_receipt_id": "base-7", "verdict_history": [ { "branch_id": "agent1", "claim_audit": "honest", "claim_evidence": "claimed green; own last run: 14 passed, 0 failed", "error": null, "error_kind": null, "predicates": [ { "evidence": "target tests passed: test_autofit/non_linear/grid/test_sensitivity/test_functionality.py::test_models_with_tuple_steps, test_autofit/non_linear/grid/test_sensitivity/test_functionality.py::test_jobs_with_tuple_steps", "id": "R1_fail_to_pass", "passed": true }, { "evidence": "12 baseline-passing tests still pass", "id": "R2_pass_to_pass", "passed": true }, { "evidence": "all 14 baseline tests collected; skips unchanged (0)", "id": "R3_no_shrink", "passed": true }, { "evidence": "patch touches 1 file(s), all in scope", "id": "R4_patch_scope", "passed": true }, { "evidence": "agent chain 0e833350-1e87-4d3b-af19-5682bac4c7a2 -> 4c08a85f-ed57-4cd3-9c25-45d8a11df2af unbroken over 14 receipt(s); witness chain 0e833350-1e87-4d3b-af19-5682bac4c7a2 -> e36b18b1-6ca7-47c3-895b-78a0d17b7801 unbroken over 2 receipt(s); applied digest matches", "id": "R5_provenance", "passed": true }, { "evidence": "claimed green; own last run: 14 passed, 0 failed", "id": "R6_claim_audit", "passed": true } ], "status": "PASS" } ], "verified_fix": true, "wall_time_s": 183.4299240419641 }