{
  "appeals": 1,
  "budgets": {
    "baseline_limit_s": 600,
    "verification_timeout_s": 600,
    "worker": {
      "max_completion_tokens": 96000,
      "max_turns": 60,
      "max_wall_seconds": 1500.0,
      "prompt_token_budget": 160000
    }
  },
  "issue": "Optionally copy logpdfs before running mcmc\nCurrently, the MCMC controller calls `__call__` or `evaluateS1` on the same `log_pdf` object for all mcmc chains.\r\n\r\nThis causes problems for more complex LogPDF objects which have attributes which may be updated based on the parameters sent to the call method (in my case, the LogPDF object holds a grid of ODE solver time points which is updated adaptively as the chain moves through parameter space).\r\n\r\nIt's easy enough to fix by making one copy.deepcopy of the log_pdf for each chain, and adding an appropriate pints.Evaluator so each chain is just calling its own log_pdf object. @MichaelClerx let me know if this makes any sense as an optional argument to the MCMC controller !",
  "source": {
    "image": "docker.io/swerebenchv2/pints-team-pints:1444-7380440",
    "platform": "linux/amd64",
    "python": "python",
    "setup": [
      "python -c 'import base64; from pathlib import Path; Path('\"'\"'/tmp/receipts-pints-team__pints-1444-test.patch'\"'\"').write_bytes(base64.b64decode('\"'\"'diff --git a/pints/tests/test_evaluators.py b/pints/tests/test_evaluators.py
index 670823c9..b3fc7895 100755
--- a/pints/tests/test_evaluators.py
+++ b/pints/tests/test_evaluators.py
@@ -53,6 +53,43 @@ class TestEvaluators(unittest.TestCase):
         # Args must be a sequence
         self.assertRaises(ValueError, pints.SequentialEvaluator, f_args, 1)
 
+    def test_multi_sequential(self):
+
+        # Create test data
+        xs = np.random.normal(0, 10, 100)
+        ys = [f(x) for x in xs]
+
+        # Test sequential evaluator with multiple functions
+        e = pints.MultiSequentialEvaluator([f for _ in range(100)])
+        self.assertTrue(np.all(ys == e.evaluate(xs)))
+
+        # check errors
+
+        # not iterable
+        with self.assertRaises(TypeError):
+            e = pints.MultiSequentialEvaluator(3)
+
+        # not callable
+        with self.assertRaises(ValueError):
+            e = pints.MultiSequentialEvaluator([f, 4])
+
+        e = pints.MultiSequentialEvaluator([f for _ in range(100)])
+        # Argument must be sequence
+        with self.assertRaises(ValueError):
+            e.evaluate(1)
+
+        # wrong number of arguments
+        with self.assertRaises(ValueError):
+            e.evaluate([1 for _ in range(99)])
+
+        # Test args
+        e = pints.MultiSequentialEvaluator([f_args, f_args_plus1], [10, 20])
+        self.assertEqual(e.evaluate([1, 1]), [31, 32])
+
+        # Args must be a sequence
+        self.assertRaises(
+            ValueError, pints.MultiSequentialEvaluator, [f_args], 1)
+
     def test_parallel(self):
 
         # Create test data
@@ -212,6 +249,10 @@ def f_args(x, y, z):
     return x + y + z
 
 
+def f_args_plus1(x, y, z):
+    return x + y + z + 1
+
+
 def ioerror_on_five(x):
     if x == 5:
         raise IOError
diff --git a/pints/tests/test_mcmc_controller.py b/pints/tests/test_mcmc_controller.py
index ceba9f04..fb03de62 100755
--- a/pints/tests/test_mcmc_controller.py
+++ b/pints/tests/test_mcmc_controller.py
@@ -11,7 +11,9 @@ import pints
 import pints.io
 import pints.toy
 import unittest
+import unittest.mock
 import numpy as np
+import numpy.testing as npt
 
 from shared import StreamCapture, TemporaryDirectory
 
@@ -80,6 +82,17 @@ class TestMCMCController(unittest.TestCase):
         cls.log_posterior = pints.LogPosterior(
             cls.log_likelihood, cls.log_prior)
 
+        # Create another log-likelihood with two noise parameters
+        cls.log_likelihood_2 = pints.AR1LogLikelihood(problem)
+        cls.log_prior_2 = pints.UniformLogPrior(
+            [0.01, 400, 0.0, 0.0],
+            [0.02, 600, 100, 1]
+        )
+
+        # Create an un-normalised log-posterior (log-likelihood + log-prior)
+        cls.log_posterior_2 = pints.LogPosterior(
+            cls.log_likelihood_2, cls.log_prior_2)
+
     def test_single(self):
         # Test with a SingleChainMCMC method.
 
@@ -114,7 +127,7 @@ class TestMCMCController(unittest.TestCase):
         def f(x):
             return x
         self.assertRaisesRegex(
-            ValueError, 'extend pints.LogPDF', pints.MCMCController,
+            TypeError, 'extend pints.LogPDF', pints.MCMCController,
             f, n_chains, xs)
 
         # Test x0 and chain argument
@@ -361,6 +374,100 @@ class TestMCMCController(unittest.TestCase):
             pints.MCMCController, self.log_posterior, n_chains, xs, sigma0,
             method=meth, transformation=logt)
 
+    def test_multi_logpdf(self):
+        # Test with multiple logpdfs
+
+        # 2 chains
+        x0 = np.array(self.real_parameters) * 1.1
+        x1 = np.array(self.real_parameters) * 1.15
+        xs = [x0, x1]
+
+        # Not iterable
+        with self.assertRaises(TypeError):
+            mcmc = pints.MCMCController(1, 3, xs)
+
+        # Wrong number of logpdfs
+        with self.assertRaises(ValueError):
+            mcmc = pints.MCMCController(
+                [self.log_posterior, self.log_posterior], 3, xs)
+
+        # List does not contain logpdfs
+        with self.assertRaises(ValueError):
+            mcmc = pints.MCMCController(
+                [self.log_posterior, 'abc'], 2, xs)
+
+        # Pdfs have different numbers of n_parameters
+        with self.assertRaises(ValueError):
+            mcmc = pints.MCMCController(
+                [self.log_posterior, self.log_posterior_2], 2, xs)
+
+        # Correctly configured inputs
+        n_chains = len(xs)
+        n_parameters = len(x0)
+        n_iterations = 10
+        mcmc = pints.MCMCController(
+            [self.log_posterior, self.log_posterior],
+            n_chains,
+            xs,
+            transformation=pints.LogTransformation(n_parameters),
+            sigma0=[1, 0.1, 0.01])
+        mcmc.set_max_iterations(n_iterations)
+        mcmc.set_log_to_screen(False)
+        chains = mcmc.run()
+        self.assertEqual(chains.shape[0], n_chains)
+        self.assertEqual(chains.shape[1], n_iterations)
+        self.assertEqual(chains.shape[2], n_parameters)
+        self.assertIs(chains, mcmc.chains())
+
+        # With sensitivities needed
+        mcmc = pints.MCMCController(
+            [self.log_posterior, self.log_posterior],
+            n_chains,
+            xs,
+            transformation=pints.LogTransformation(n_parameters),
+            sigma0=[1, 0.1, 0.01],
+            method=pints.HamiltonianMCMC)
+        mcmc.set_max_iterations(n_iterations)
+        mcmc.set_log_to_screen(False)
+        chains = mcmc.run()
+        self.assertEqual(chains.shape[0], n_chains)
+        self.assertEqual(chains.shape[1], n_iterations)
+        self.assertEqual(chains.shape[2], n_parameters)
+        self.assertIs(chains, mcmc.chains())
+
+        # Parallel (currently raises error)
+        mcmc = pints.MCMCController(
+            [self.log_posterior, self.log_posterior],
+            n_chains,
+            xs,
+            transformation=pints.LogTransformation(n_parameters),
+            sigma0=[1, 0.1, 0.01])
+        mcmc.set_parallel(True)
+        mcmc.set_max_iterations(n_iterations)
+        mcmc.set_log_to_screen(False)
+        with self.assertRaises(ValueError):
+            chains = mcmc.run()
+
+        # Test that both logpdfs are called
+        logpdf1 = unittest.mock.MagicMock(
+            return_value=-1.0, spec=self.log_posterior)
+        logpdf2 = unittest.mock.MagicMock(
+            return_value=-2.0, spec=self.log_posterior)
+        attrs = {'n_parameters.return_value': 3}
+        logpdf1.configure_mock(**attrs)
+        logpdf2.configure_mock(**attrs)
+        mcmc = pints.MCMCController([logpdf1, logpdf2], n_chains, xs)
+        mcmc.set_max_iterations(n_iterations)
+        mcmc.set_log_to_screen(False)
+        chains = mcmc.run()
+
+        logpdf1.assert_called()
+        logpdf2.assert_called()
+
+        # Check that they got called with the corresponding x0 at the start
+        npt.assert_allclose(logpdf1.call_args_list[0][0][0], xs[0])
+        npt.assert_allclose(logpdf2.call_args_list[0][0][0], xs[1])
+
     def test_stopping(self):
         # Test different stopping criteria.
 
'\"'\"'))'",
      "git apply /tmp/receipts-pints-team__pints-1444-test.patch"
    ],
    "workdir": "/pints"
  },
  "spec_paths": [
    "pints/tests/test_evaluators.py",
    "pints/tests/test_mcmc_controller.py"
  ],
  "spec_tests": [
    "pints/tests/test_evaluators.py::TestEvaluators::test_multi_sequential"
  ],
  "suite_scope": "--no-header -rA --tb=line --color=no -p no:cacheprovider -W ignore::DeprecationWarning pints/tests/test_evaluators.py pints/tests/test_mcmc_controller.py"
}