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{"receipt_id":"agent1-3","seq":3,"branch_id":"agent1","kind":"command","cmd":"/opt/receipts-f9221898dc0844538d0d18c156a016df/bin/busybox mkdir -p /opt/receipts/reports && python -I /opt/receipts-f9221898dc0844538d0d18c156a016df/receipts_pytest.py tests/unit/test_base.py::TestProcessingModule::test_deprecated_add_data_interface -v -o junit_family=xunit1 -p no:cacheprovider -rA --continue-on-collection-errors --junitxml=/opt/receipts/reports/agent1-3.xml","path":null,"exit_code":0,"stdout_tail":"============================= test session starts ==============================\nplatform linux -- Python 3.10.19, pytest-8.2.1, pluggy-1.6.0 -- /usr/local/bin/python\nrootdir: /pynwb\nconfigfile: pyproject.toml\nplugins: cov-5.0.0\ncollecting ... collected 1 item\n\ntests/unit/test_base.py::TestProcessingModule::test_deprecated_add_data_interface PASSED [100%]\n\n==================================== PASSES ====================================\n------------ generated xml file: /opt/receipts/reports/agent1-3.xml ------------\n=========================== short test summary info ============================\nPASSED tests/unit/test_base.py::TestProcessingModule::test_deprecated_add_data_interface\n============================== 1 passed in 1.89s ===============================\n","stderr_tail":"","stdout_sha256":"68e6160f3fe1b0cd927a4e8ad540e4df0286e2a2f758cc1bb0fcf52faf49c120","log_path":"~/dev/nebius-hackathon/pilot/v2-P/neurodatawithoutborders__pynwb-2052/runs/pilot-neurodatawithoutborders__pynwb-2052-2bde293e84/logs/agent1/agent1-3.log","tree_digest":"f5f5105adeec6c4e804b17a1cab9db43a70dda211a7f42b815734fd93096a2d5","tree_download_s":9.97855949983932,"started_at":"2026-10-03T17:58:49.888182Z","duration_s":2.737455,"timed_out":false,"image_before":"c5682a11-5712-494d-b310-1c3adcbeab48","image_after":"809c93ae-9027-4fcb-a82b-633033dd964f","junit":{"passed":["tests/unit/test_base.py::TestProcessingModule::test_deprecated_add_data_interface"],"failed":[],"errors":[],"skipped":[],"collection_errors":[],"failure_text":{}},"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-4","seq":4,"branch_id":"agent1","kind":"command","cmd":"/opt/receipts-7347999d9dfa4e5695f4dbf11480c0bc/bin/busybox mkdir -p /opt/receipts/reports && python -I /opt/receipts-7347999d9dfa4e5695f4dbf11480c0bc/receipts_pytest.py tests/unit/test_base.py --no-header -rA --tb=line --color=no -p no:cacheprovider -W ignore::DeprecationWarning -o junit_family=xunit1 -p no:cacheprovider -rA --continue-on-collection-errors --junitxml=/opt/receipts/reports/agent1-4.xml","path":null,"exit_code":0,"stdout_tail":"============================= test session starts ==============================\ncollected 67 items\n\ntests/unit/test_base.py ................................................ [ 71%]\n...................                                                      [100%]\n\n==================================== PASSES ====================================\n------------ generated xml file: /opt/receipts/reports/agent1-4.xml ------------\n=========================== short test summary info ============================\nPASSED tests/unit/test_base.py::TestProcessingModule::test_add_data_interface\nPASSED tests/unit/test_base.py::TestProcessingModule::test_deprecated_add_container\nPASSED tests/unit/test_base.py::TestProcessingModule::test_deprecated_add_data_interface\nPASSED tests/unit/test_base.py::TestProcessingModule::test_deprecated_get_container\nPASSED tests/unit/test_base.py::TestProcessingModule::test_deprecated_get_data_interface\nPASSED tests/unit/test_base.py::TestProcessingModule::test_get_data_interface\nPASSED tests/unit/test_base.py::TestProcessingModule::test_getitem\nPASSED tests/unit/test_base.py::TestProcessingModule::test_init\nPASSED tests/unit/test_base.py::TestTimeSeries::test_bad_continuity_timeseries\nPASSED tests/unit/test_base.py::TestTimeSeries::test_conflicting_time_args\nPASSED tests/unit/test_base.py::TestTimeSeries::test_data_timeseries\nPASSED tests/unit/test_base.py::TestTimeSeries::test_dataio_dci_data\nPASSED tests/unit/test_base.py::TestTimeSeries::test_dataio_dci_timestamps\nPASSED tests/unit/test_base.py::TestTimeSeries::test_dataio_list_data\nPASSED tests/unit/test_base.py::TestTimeSeries::test_dataio_list_timestamps\nPASSED tests/unit/test_base.py::TestTimeSeries::test_dci_data\nPASSED tests/unit/test_base.py::TestTimeSeries::test_dci_data_arr\nPASSED tests/unit/test_base.py::TestTimeSeries::test_dci_timestamps\nPASSED tests/unit/test_base.py::TestTimeSeries::test_dci_timestamps_arr\nPASSED tests/unit/test_base.py::TestTimeSeries::test_file_with_non_positive_rate_in_construct_mode\nPASSED tests/unit/test_base.py::TestTimeSeries::test_file_with_rate_and_timestamps_in_construct_mode\nPASSED tests/unit/test_base.py::TestTimeSeries::test_file_with_starting_time_and_timestamps_in_construct_mode\nPASSED tests/unit/test_base.py::TestTimeSeries::test_get_data_in_units\nPASSED tests/unit/test_base.py::TestTimeSeries::test_get_timestamps\nPASSED tests/unit/test_base.py::TestTimeSeries::test_good_continuity_timeseries\nPASSED tests/unit/test_base.py::TestTimeSeries::test_init_conversion_offset\nPASSED tests/unit/test_base.py::TestTimeSeries::test_init_data_timestamps\nPASSED tests/unit/test_base.py::TestTimeSeries::test_init_datalink_set\nPASSED tests/unit/test_base.py::TestTimeSeries::test_init_no_parent\nPASSED tests/unit/test_base.py::TestTimeSeries::test_init_rate\nPASSED tests/unit/test_base.py::TestTimeSeries::test_init_timestampslink_set\nPASSED tests/unit/test_base.py::TestTimeSeries::test_no_starting_time\nPASSED tests/unit/test_base.py::TestTimeSeries::test_no_time\nPASSED tests/unit/test_base.py::TestTimeSeries::test_non_positive_rate\nPASSED tests/unit/test_base.py::TestTimeSeries::test_repr_html\nPASSED tests/unit/test_base.py::TestTimeSeries::test_timestamps_data_length_error_raised\nPASSED tests/unit/test_base.py::TestTimeSeries::test_timestamps_data_length_warning_construct_mode\nPASSED tests/unit/test_base.py::TestTimeSeries::test_timestamps_timeseries\nPASSED tests/unit/test_base.py::TestImage::test_init\nPASSED tests/unit/test_base.py::TestImages::test_images\nPASSED tests/unit/test_base.py::TestTimeSeriesReferenceVectorData::test_add_row\nPASSED tests/unit/test_base.py::TestTimeSeriesReferenceVectorData::test_add_row_get_length1_valid_data\nPASSED tests/unit/test_base.py::TestTimeSeriesReferenceVectorData::test_add_row_restricted_type\nPASSED tests/unit/test_base.py::TestTimeSeriesReferenceVectorData::test_add_row_with_bad_tuple\nPASSED tests/unit/test_base.py::TestTimeSeriesReferenceVectorData::test_add_row_with_plain_tuple\nPASSED tests/unit/test_base.py::TestTimeSeriesReferenceVectorData::test_append\nPASSED tests/unit/test_base.py::TestTimeSeriesReferenceVectorData::test_append_get_length1_valid_data\nPASSED tests/unit/test_base.py::TestTimeSeriesReferenceVectorData::test_append_restricted_type\nPASSED tests/unit/test_base.py::TestTimeSeriesReferenceVectorData::test_append_with_bad_tuple\nPASSED tests/unit/test_base.py::TestTimeSeriesReferenceVectorData::test_append_with_plain_tuple\nPASSED tests/unit/test_base.py::TestTimeSeriesReferenceVectorData::test_get_empty\nPASSED tests/unit/test_base.py::TestTimeSeriesReferenceVectorData::test_get_length1_invalid_data\nPASSED tests/unit/test_base.py::TestTimeSeriesReferenceVectorData::test_get_length5_valid_data\nPASSED tests/unit/test_base.py::TestTimeSeriesReferenceVectorData::test_get_length5_with_invalid_data\nPASSED tests/unit/test_base.py::TestTimeSeriesReferenceVectorData::test_init\nPASSED tests/unit/test_base.py::TestTimeSeriesReference::test_check_types\nPASSED tests/unit/test_base.py::TestTimeSeriesReference::test_data_property\nPASSED tests/unit/test_base.py::TestTimeSeriesReference::test_data_property_bad_reference\nPASSED tests/unit/test_base.py::TestTimeSeriesReference::test_data_property_invalid_reference\nPASSED tests/unit/test_base.py::TestTimeSeriesReference::test_empty_reference_creation\nPASSED tests/unit/test_base.py::TestTimeSeriesReference::test_is_invalid\nPASSED tests/unit/test_base.py::TestTimeSeriesReference::test_is_valid\nPASSED tests/unit/test_base.py::TestTimeSeriesReference::test_is_valid_bad_index\nPASSED tests/unit/test_base.py::TestTimeSeriesReference::test_is_valid_no_num_samples\nPASSED tests/unit/test_base.py::TestTimeSeriesReference::test_timestamps_property\nPASSED tests/unit/test_base.py::TestTimeSeriesReference::test_timestamps_property_bad_reference\nPASSED tests/unit/test_base.py::TestTimeSeriesReference::test_timestamps_property_invalid_reference\n============================== 67 passed in 4.29s 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::TestTimeSeriesReference::test_data_property_invalid_reference","tests/unit/test_base.py::TestTimeSeriesReference::test_empty_reference_creation","tests/unit/test_base.py::TestTimeSeriesReference::test_is_invalid","tests/unit/test_base.py::TestTimeSeriesReference::test_is_valid","tests/unit/test_base.py::TestTimeSeriesReference::test_is_valid_bad_index","tests/unit/test_base.py::TestTimeSeriesReference::test_is_valid_no_num_samples","tests/unit/test_base.py::TestTimeSeriesReference::test_timestamps_property","tests/unit/test_base.py::TestTimeSeriesReference::test_timestamps_property_bad_reference","tests/unit/test_base.py::TestTimeSeriesReference::test_timestamps_property_invalid_reference"],"failed":[],"errors":[],"skipped":[],"collection_errors":[],"failure_text":{}},"diff":null,"patch_sha256":null,"dropped_paths":[],"snapshot_sha":null}
{"receipt_id":"agent1-5","seq":5,"branch_id":"agent1","kind":"diff","cmd":"compute patch in executor staging agent1-920f1d5a77f94c11802e51348f713c5b: /opt/homebrew/Cellar/git/2.53.0/bin/git -c core.hooksPath=/dev/null -c core.attributesFile=/dev/null -c diff.external= -c core.quotePath=false add -A && /opt/homebrew/Cellar/git/2.53.0/bin/git -c core.hooksPath=/dev/null -c core.attributesFile=/dev/null -c diff.external= -c core.quotePath=false diff --cached --binary --no-ext-diff --no-textconv --no-renames 08c7c797a5fcba8be7f76dc091a6757e060be2af","path":null,"exit_code":0,"stdout_tail":"diff --git a/src/pynwb/base.py b/src/pynwb/base.py\nindex e639eccf..a7154450 100644\n--- a/src/pynwb/base.py\n+++ b/src/pynwb/base.py\n@@ -77,6 +77,7 @@ class ProcessingModule(MultiContainerInterface):\n              'doc': 'the NWBDataInterface to add to this Module'})\n     def add_data_interface(self, **kwargs):\n         warn('add_data_interface is deprecated and will be removed in PyNWB 4.0. Use add instead.', DeprecationWarning)\n+        self.add(kwargs['NWBDataInterface'])\n \n     @docval({'name': 'data_interface_name', 'type': str, 'doc': 'the name of the NWBContainer to retrieve'})\n     def get_data_interface(self, **kwargs):\n","stderr_tail":"","stdout_sha256":"347df7c95fc0642d27483dedc4115e095966d34f3dfdd6de0df0fe475307ac8b","log_path":null,"tree_digest":"f5f5105adeec6c4e804b17a1cab9db43a70dda211a7f42b815734fd93096a2d5","tree_download_s":8.638927916996181,"started_at":"2026-10-03T18:00:20.994735Z","duration_s":0.18614566698670387,"timed_out":false,"image_before":"29e9b191-34a8-4e24-8c0e-525909d43f6b","image_after":"29e9b191-34a8-4e24-8c0e-525909d43f6b","junit":null,"diff":{"files":[{"path":"src/pynwb/base.py","added":1,"deleted":0,"category":"source","status":"modified"}],"patch_sha256":"347df7c95fc0642d27483dedc4115e095966d34f3dfdd6de0df0fe475307ac8b","patch_path":"~/dev/nebius-hackathon/pilot/v2-P/neurodatawithoutborders__pynwb-2052/runs/pilot-neurodatawithoutborders__pynwb-2052-2bde293e84/artifacts/agent1/agent1-5.patch"},"patch_sha256":"347df7c95fc0642d27483dedc4115e095966d34f3dfdd6de0df0fe475307ac8b","dropped_paths":[],"snapshot_sha":"08c7c797a5fcba8be7f76dc091a6757e060be2af"}